View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_44 (Length: 239)
Name: NF2722_low_44
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_44 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 43909198 - 43908978
Alignment:
| Q |
19 |
ctagaagcctcattcttgcataaatttcaggtctcctgccatgctcatagggctcattctctacatatctctgcaacaaaacctgaaactgctggaattg |
118 |
Q |
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| T |
43909198 |
ctagaagcctcattcttgcataaatttcaggtctcctgccatgctcatagggctcattctctacatatctctgcaacaaaacctgaaactgctggaattg |
43909099 |
T |
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| Q |
119 |
ttgtgcaatggtagccggacaaccgatatcaaaatcgtggcgcgattgtgacgcatgtttagaacggaaatttgtgtagttccagctaagtgcttcccat |
218 |
Q |
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| T |
43909098 |
ttgtgcaatggtggccggacaaccgatatcaaaatcgtggcgcgattgtgacgcatgtttataacggaaatttgtgtagttccagctaagtgcttcccat |
43908999 |
T |
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| Q |
219 |
gttaagcaaatttgtgcaaca |
239 |
Q |
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| T |
43908998 |
gttaagcaaatttgtgcaaca |
43908978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 31615894 - 31615779
Alignment:
| Q |
27 |
ctcattcttgcataaatttcaggtctcctgccatgctcatagggctcattctctacatatctctgcaacaaaacctgaaactgctggaattgttgtgcaa |
126 |
Q |
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| T |
31615894 |
ctcattctagcataaatctctggtctcctaccaaactcataaggttcattctctacatatctttgcaacaaaacttgaaattgttgaaattgttgtgcaa |
31615795 |
T |
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| Q |
127 |
tggtagccggacaacc |
142 |
Q |
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| T |
31615794 |
ttgttgctggacaacc |
31615779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 31615740 - 31615694
Alignment:
| Q |
193 |
tgtagttccagctaagtgcttcccatgttaagcaaatttgtgcaaca |
239 |
Q |
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| T |
31615740 |
tgtagttccaattaagtgcttcccatgttaagcaaatttgtgcaaca |
31615694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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