View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2722_low_52 (Length: 206)
Name: NF2722_low_52
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_52 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 49005076 - 49004891
Alignment:
| Q |
21 |
aatgatccaaaacagcccaagtattcccagagttagca-attcacacctcttctatcaaagtgtactttttacctgattaataatgtctaagggggcaag |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||| || ||||||||| ||||||||||||||| || ||||| | ||||| || |
|
|
| T |
49005076 |
aatgatccaagacagcccaagtattcccagagttagcacattcacacctgttttatcaaagtatactttttacctgatgaaaaatgtttg-gggggtgag |
49004978 |
T |
|
| Q |
120 |
agattatgcatatagccagacatgacacgaggcaactacattgactaatcattatgagtgagctgaagtacgtatcgagcattttgc |
206 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
49004977 |
agattatgcatatacctagacatgacacgaggcaactacattgactaatcattacgagtgagctgaagtacatatcgagcattttgc |
49004891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 38117274 - 38117088
Alignment:
| Q |
21 |
aatgatccaaaacagcccaagtattcccagagttagca-attcacacctcttctatcaaagtgtactttttacctgattaataatgtctaagggggcaag |
119 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| || ||||| || |
|
|
| T |
38117274 |
aatgatccaagaaagcccaagtattcccagagttagcacattcacacctcttctatcaaagtatactttttacctgattattaatgtttaggggggtgag |
38117175 |
T |
|
| Q |
120 |
agattatgcatatagccagacatgacacgaggcaactacattgactaatcattatgagtgagctgaagtacgtatcgagcattttgc |
206 |
Q |
| |
|
|||||||||||||| | ||| |||||| ||||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
38117174 |
agattatgcatatacctagatatgacatgaggcgattacattgactaatcattacgagtgagctgaagtacatatcgagcattttgc |
38117088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 38161100 - 38160914
Alignment:
| Q |
21 |
aatgatccaaaacagcccaagtattcccagagttagca-attcacacctcttctatcaaagtgtactttttacctgattaataatgtctaagggggcaag |
119 |
Q |
| |
|
|||||||||||||| || |||||||||||||||| ||| |||||||| ||||||||| |||| |||| ||||||||||||||||||| ||| |||| || |
|
|
| T |
38161100 |
aatgatccaaaacaacctaagtattcccagagttggcacattcacacatcttctatcgaagtatactctttacctgattaataatgtttaaaggggtgag |
38161001 |
T |
|
| Q |
120 |
agattatgcatatagccagacatgacacgaggcaactacattgactaatcattatgagtgagctgaagtacgtatcgagcattttgc |
206 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
38161000 |
agattatgcatatacctagacatgacaagaggcatctacattgactaatcatttcgagtgagctgaagtacatatcgagcattttgc |
38160914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University