View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2722_low_9 (Length: 658)
Name: NF2722_low_9
Description: NF2722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2722_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 359 - 651
Target Start/End: Original strand, 22125693 - 22126006
Alignment:
| Q |
359 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaa---------------------aaatacaatcaacc |
437 |
Q |
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| T |
22125693 |
ttggtttatgttacccccatcaacgtaaagaacaatatattaataaattagtccaaggttatcaaaaataatagataatcattcaaaaatacaatcaacc |
22125792 |
T |
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| Q |
438 |
aaattgataagtgcttgataccctcgactacttgattcatattcacctcttgatgttgatcaaatgacagtgaaccaaattgagttaagtccctttcgca |
537 |
Q |
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| T |
22125793 |
aaattgataagtgcttgataccctcgactacttgattcatattcaactcttgatgttgatcaaatgacagtcaaccaaattgagttaagtccctttcgca |
22125892 |
T |
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| Q |
538 |
tcactctattgttgacacaaaatccataaatctcaaacggatgttttaaagataaaaaacatctcaaattacatttttatagattctaatctcattgtta |
637 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22125893 |
tcactctattgttgagacaaaattcataaatctcaaacggatgttttaaagataaaaaacatctcaaattacatttttatagattctaatctcattgtta |
22125992 |
T |
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| Q |
638 |
tttaacctatgcta |
651 |
Q |
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| T |
22125993 |
tttaacctatgcta |
22126006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 22125335 - 22125636
Alignment:
| Q |
19 |
ttaaaatgtttaaggggaaaattatagtgccagattaagtacttttgataatcttcattgaagtaatttcttttgctacctgaaatctaaactacatgga |
118 |
Q |
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| T |
22125335 |
ttaaaatgtttaaggggaaaattatagtgccagat-aagtacttttaataatcttcattgaagtaaattcttttgctacctgaa-tcttaactaaatgga |
22125432 |
T |
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| Q |
119 |
ctgcaatgagacaacacccaggttc--------------------agttgaggattcagtgttcacagtacagnnnnnnnnnnnngggataacatccttt |
198 |
Q |
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| T |
22125433 |
ctgcaatgagacaacacccaggttctgcaactttaccaagagcccagttgaggattcaatgttcgcagtacagaaaaagaaaaaagggataacatccatt |
22125532 |
T |
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| Q |
199 |
tacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttacaaaatgattactataattgaagaaactatag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22125533 |
tacacaaatggagtgaaacaggagtagagttataaaataaaacaactattagcttcaaatgtattttacaaaatgattaatataattgaagaaactatag |
22125632 |
T |
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| Q |
299 |
ctcc |
302 |
Q |
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|||| |
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| T |
22125633 |
ctcc |
22125636 |
T |
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