View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_10 (Length: 438)
Name: NF2723_high_10
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 9e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 30898957 - 30898753
Alignment:
| Q |
1 |
agaaaatattttataattgatgaagtatcgatatctgatatgtatcctgcactaacatt-gttcgatacgctatgatacgaaccaaaagtgtatatggtt |
99 |
Q |
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| T |
30898957 |
agaagatactttataattgatgaagtatcgatatctgatatgtattcagcactgacatttgttcgatacgctatgatacgaaccagaagtgtatatggtt |
30898858 |
T |
|
| Q |
100 |
attaaattatttnnnnnnnntattgtccaatacatttaaaataagcccaaggtacagttgtgggaaccgatgcgcatgagatacatgatttttcttattt |
199 |
Q |
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| T |
30898857 |
attaaattatttaaaaaaaatattgtccaatacatttaaaataagcccaaggtacaattgtgggaaccgatgcgtatgagatacatgatttttcttattt |
30898758 |
T |
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| Q |
200 |
ctttt |
204 |
Q |
| |
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||||| |
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| T |
30898757 |
ctttt |
30898753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 30954832 - 30954934
Alignment:
| Q |
311 |
ttaaagaatatgagtgtctcttccattgttatttatttatttatcaggttctaggcattctcaagttgtcggtacttaatcacaaagagtctagtttaga |
410 |
Q |
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| T |
30954832 |
ttaaagaacatgtgtgactcttccattgttgtttatttttt----aggtttaaggcgctctcaagttctcggtaccgaatcataaagagtctagtttagg |
30954927 |
T |
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| Q |
411 |
atttcaa |
417 |
Q |
| |
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||||||| |
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| T |
30954928 |
atttcaa |
30954934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 33738242 - 33738194
Alignment:
| Q |
4 |
aaatattttataattgatgaagtatcgatatctgatatgtatcctgcact |
53 |
Q |
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| T |
33738242 |
aaatactttaaaattgatgacgtatcg-tatctgatatgtatcctgcact |
33738194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 31450620 - 31450658
Alignment:
| Q |
17 |
ttgatgaagtatcgatatctgatatgtatcctgcactaa |
55 |
Q |
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| T |
31450620 |
ttgatgaagtaccgatatctgatatgtattctgcactaa |
31450658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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