View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_11 (Length: 436)
Name: NF2723_high_11
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 96 - 413
Target Start/End: Complemental strand, 51766507 - 51766190
Alignment:
| Q |
96 |
caaacgacggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgc |
195 |
Q |
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| T |
51766507 |
caaacgacggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgc |
51766408 |
T |
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| Q |
196 |
tttctgtagtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggtctctattccacatgaaaagatacaacaagtc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51766407 |
tttctgtagtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggtctctattccacttgaaaagatacaacaagtc |
51766308 |
T |
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| Q |
296 |
aaccaaagtcaaaatatgaagaaaccgtcagaaaaatacatagaaatagtcactgtggatggtttcgacttctggtttatgggtttcttcaattacaaga |
395 |
Q |
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| T |
51766307 |
aaccaaagtcaaaatatgatgaaaccgtcagaaaaatacatagaaatagtcactgtggatggtttcgacttctggtttatgggtttcttcaattacaaga |
51766208 |
T |
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| Q |
396 |
aagctttaagatatctcc |
413 |
Q |
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| T |
51766207 |
aagctttaagatatctcc |
51766190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 3 - 264
Target Start/End: Complemental strand, 51753833 - 51753572
Alignment:
| Q |
3 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagagaaagtatttatgcaactttttaatgcaaacga |
102 |
Q |
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| T |
51753833 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaaaga |
51753734 |
T |
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| Q |
103 |
cggggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgctttctgt |
202 |
Q |
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| T |
51753733 |
tggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgt |
51753634 |
T |
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| Q |
203 |
agtgacaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggt |
264 |
Q |
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| T |
51753633 |
agtgagaaatccatcaagatctcttcaccaaaaggagaattgagtagagttcgctataaggt |
51753572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 261 - 413
Target Start/End: Complemental strand, 51753460 - 51753308
Alignment:
| Q |
261 |
aggtctctattccacatgaaaagatacaacaagtcaaccaaagtcaaaatatgaagaaaccgtcagaaaaatacatagaaatagtcactgtggatggttt |
360 |
Q |
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|||| |||||||||||||||||||| || || |||||||||||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||| |
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| T |
51753460 |
aggtatctattccacatgaaaagattcagcatgtcaaccaaagtcaaaatgtgaagaaaccttcagaaaaatacatagaaatagtcaccgtagatggttt |
51753361 |
T |
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| Q |
361 |
cgacttctggtttatgggtttcttcaattacaagaaagctttaagatatctcc |
413 |
Q |
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| T |
51753360 |
cgacttctggtttatgggtttctttaattatcggaaagctttaagatatctcc |
51753308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 12196347 - 12196124
Alignment:
| Q |
5 |
ataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagagaaagtatttatgcaactttttaatgcaaacgacg |
104 |
Q |
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||||| |||||||| ||||| || |||| || ||||| ||||||||||| ||||| ||||| || || || || |||||||| |||| || ||| || | |
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| T |
12196347 |
ataaccgatacagtgaaaggaaagctgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatgcaactatttagtgtaaaagatg |
12196248 |
T |
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| Q |
105 |
gggagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgctttctgtag |
204 |
Q |
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| |||| ||| | ||||||||||| ||||| |||||||| ||||| |||| | |||| ||||| |||||||| || ||| | |||||||| || ||||| |
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| T |
12196247 |
gagagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtag |
12196148 |
T |
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| Q |
205 |
tgacaaatccatcaaaatttcttc |
228 |
Q |
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||| | ||| || ||||| ||||| |
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| T |
12196147 |
tgagagatcaattaaaatctcttc |
12196124 |
T |
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