View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_14 (Length: 352)
Name: NF2723_high_14
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_14 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 41728860 - 41729195
Alignment:
| Q |
15 |
cacagactacactttgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcacatttaa |
114 |
Q |
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| T |
41728860 |
cacaaactacactatgatcacattgcacatttattactgttagcaaagcaggagaaccaagattctctcttacataacaaacaaggaccctcacatttaa |
41728959 |
T |
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| Q |
115 |
ataactcaattctgaatttccaaacataaaaaactgcnnnnnnnnnnttcaagcctatactctagataacataatcataaaactcagaaatatgtgcaac |
214 |
Q |
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| T |
41728960 |
ataactcaattctgaatttccaaacataaaa--ctgcaaacaattttttcaagcctatactctagataacataatcataaaactcagaaatatgtgcaac |
41729057 |
T |
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| Q |
215 |
atggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgcagtccttggagga |
314 |
Q |
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| T |
41729058 |
atggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctccaatcaattttgccggattcccaaccaccgtagtccttggagga |
41729157 |
T |
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| Q |
315 |
acttccttgatcacaactgaaccagcgccaattttagc |
352 |
Q |
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| T |
41729158 |
acttccttgatcacaactgaaccggcaccaattttagc |
41729195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 352
Target Start/End: Original strand, 23158111 - 23158290
Alignment:
| Q |
173 |
actctagataacataatcataaaactcagaaatatgtgcaacatggtccatagtgtggctaggaatcttatcaagtttaataggattattcttccctcca |
272 |
Q |
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| T |
23158111 |
actctaaataacataatcagaccactcagaaatatatgaagtatggtccatagtagagctaggaatcttatccaacatgataggattatcttttccacca |
23158210 |
T |
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| Q |
273 |
atcaattttgccggattcccaaccaccgcagtccttggaggaacttccttgatcacaactgaaccagcgccaattttagc |
352 |
Q |
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| T |
23158211 |
atcaacttagctggatttccaacagcagtagttcttggtggaacatccttcaacacaacagaaccagcaccaatcttagc |
23158290 |
T |
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