View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_17 (Length: 306)
Name: NF2723_high_17
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 11821048 - 11820773
Alignment:
| Q |
17 |
agattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccaccacttctgattttaatttgaatattgactt |
116 |
Q |
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| T |
11821048 |
agattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccaccacttctgattttgatttgaatattgactt |
11820949 |
T |
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| Q |
117 |
gcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacg |
216 |
Q |
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| T |
11820948 |
gcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacg |
11820849 |
T |
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| Q |
217 |
tatgtagtttttaagaacaatggaaaatgaagtgtttgtttgagagaaaacaatgttggagattgttggatctgtg |
292 |
Q |
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| T |
11820848 |
tatgtagtttttaagaacaatggaaaatgaagtgtttgtttgagagaaaacaatgttggagattgttggatctgtg |
11820773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 11835316 - 11835588
Alignment:
| Q |
17 |
agattaaacatatcaagtatgataaagggtgattgatttacataagaaataccctcataatcatgtccaccacttctgattttaatttgaatattgactt |
116 |
Q |
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| T |
11835316 |
agattaaacatatcaagtatgataaagggttggttagagatgtatgaaataccctcgtaatcatgtccaccgcttcttattttgatttgaatgttgactt |
11835415 |
T |
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| Q |
117 |
gcttggcacatataacagtggattgaacatgtgagggttgttttggagttactatgagtaatggttttgtcgttgaagttgtgttgaaacgtgcgttacg |
216 |
Q |
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| T |
11835416 |
gcttagcacatattacagtggattggacatgcgaaggttgttttggagtgactatgagtaatggttttgttattgaagttgtgttgaaacgtgcgttacg |
11835515 |
T |
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| Q |
217 |
tatgtagtttttaagaacaatggaaaatgaagtgtttgtttgagagaaaacaatgttggagattgttggatct |
289 |
Q |
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| T |
11835516 |
gatgtagttttgaaggacagtggaaaatgaaaggtttgtttgggagaaaacaatgttggagattgatggatct |
11835588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 11933538 - 11933488
Alignment:
| Q |
55 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
105 |
Q |
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| T |
11933538 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11933488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 11946759 - 11946709
Alignment:
| Q |
55 |
tacataagaaataccctcataatcatgtccaccacttctgattttaatttg |
105 |
Q |
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|||||| |||| ||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
11946759 |
tacataggaaacaccctcatagtcatgtccaccacttctaattttcatttg |
11946709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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