View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_4 (Length: 552)
Name: NF2723_high_4
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 16151637 - 16151105
Alignment:
| Q |
20 |
taaaccgtaataaaattcatatctattgagttctacaggtttcaacggataaggttccgtgttgtcgctggttcagcattttcattcctagattctctga |
119 |
Q |
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| T |
16151637 |
taaaccataataaaattcatatctattgagttctacaggtttcaacggataaggttccgtgttgtcgctgctttagcattttcattcctagattctctga |
16151538 |
T |
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| Q |
120 |
taattgttcaagtatgttaaaatctacaggttttagggttttgggagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtca |
219 |
Q |
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| T |
16151537 |
taattgttcaagtctgttaaaatctacaggttttagggttttgggagtttgagaaaaataaactacaacaatgtttgcattcatctaa--tatagtgtca |
16151440 |
T |
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| Q |
220 |
aattttgtgatgttgtggttgccgttggtgaagtgatctataaatatctttgttacttagtcaaaataaacattgtgaagttgtagacgatgcacccaat |
319 |
Q |
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||||||||||||||||||||||||||| |||| | ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
16151439 |
aattttgtgatgttgtggttgccgttgttgaaataatctacaaatatctttgctacttagtcaaaatcaacattgtgaagttgtagacgatgcacccaat |
16151340 |
T |
|
| Q |
320 |
tgatggcatgaaccaattccaaagattctccgacttccgtgga-----------gtgaccaaagtgtcatagcaaaaccc---tatagttcagcgtgacg |
405 |
Q |
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| T |
16151339 |
tgatggcatgaaccaattccaaagattctccgacttccgtggagcaaatatgttgtgaccaaagtgtcatagc--aacccttgtatagttcagcgtgacg |
16151242 |
T |
|
| Q |
406 |
gagaatgagacgtcaatgttgcacattaggcaccctgttactggtggatgccaacgagacaactgatgttagttgtctcgtgtcagtttctagagtaggc |
505 |
Q |
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| T |
16151241 |
gagaatgagacatcaatgttgcacattaggcgccctgttactggtgaatgccaacgagacaaccgatgttagttgtctcctgtcagtttctagagtaggc |
16151142 |
T |
|
| Q |
506 |
cgatcttgttgttgttttgttcacttagcatcctttg |
542 |
Q |
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| T |
16151141 |
cgatctcgttgttgttgtgttcacttagcatgctttg |
16151105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 13696944 - 13696857
Alignment:
| Q |
164 |
gagtttgtgaaaaataaactacaacaatgtttgcattcatctaatatatagtgtcaaattttgtgatgttgtggttgccgttggtgaagt |
253 |
Q |
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| T |
13696944 |
gagtttgtgaaaaataaattacaacaacgtttgcattcatgta--atatagtgccaaattttgtgatattgtcgttgccgttgttgaagt |
13696857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 951987 - 952026
Alignment:
| Q |
164 |
gagtttgtgaaaaataaactacaacaatgtttgcattcat |
203 |
Q |
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| T |
951987 |
gagtttgtgaaaaataagctacaacaatgtttgcattcat |
952026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 31653261 - 31653322
Alignment:
| Q |
280 |
tcaaaataaacattgtgaagttgtagacgatgcacccaattgatggcatgaaccaattccaa |
341 |
Q |
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| T |
31653261 |
tcaaaatccacattgtgaagttgtagatcatgcacttaattgatggcatgaagcaattccaa |
31653322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 7527879 - 7527917
Alignment:
| Q |
173 |
aaaaataaactacaacaatgtttgcattcatctaatata |
211 |
Q |
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| T |
7527879 |
aaaaataaaatacaacagtgtttgcattcatctaatata |
7527917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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