View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_6 (Length: 475)
Name: NF2723_high_6
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 41729251 - 41729710
Alignment:
| Q |
1 |
ccgtcaccaatctttggatgcctatcgccatgagccttaccggtccctcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729251 |
ccgtcaccaatctttggatgcctatcgccatgagccttaccggtccctcccaacgtcacaccgtgcaaaatggacacatcatttccaataacagcagttt |
41729350 |
T |
|
| Q |
101 |
caccaaccacaatcccagttgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729351 |
caccaaccacaatcccagttgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactccaaaaacttccgaaacgcgattctg |
41729450 |
T |
|
| Q |
201 |
aatcataacacccaaaatcttccttccatttgaccacaaattatgagctaccctatgagcttgacatgctaaaaatcctttgaaattcaagaaacaatga |
300 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729451 |
aatcataacagccaaaatcttccttccatttgaccacaaattatgagctaccctatgagcttgacatgctaaaaatcctttgaaattcaagaaacaatga |
41729550 |
T |
|
| Q |
301 |
acatgacttatacaagcagggtctctttcattaactgcttttagatcatttttcatagcatacataatttctttatcagattccaaaattctaacaaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41729551 |
acatgacttatacaagcagggtctctttcattaactgcttttagatcatttttcatagcatacataatttctttatcagattccaaaattctaacaaaaa |
41729650 |
T |
|
| Q |
401 |
gatcagaaagtgttgtactaggaagacttacactgcttaatttaacagcaaggtgattag |
460 |
Q |
| |
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| T |
41729651 |
gatcagaaagtgttgtactaggaagacttacactgcttaatttaacagcaaggtgattag |
41729710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 41694316 - 41694253
Alignment:
| Q |
234 |
ccacaaattatgagctaccctatgagcttgacatg-ctaaaaatcctttgaaattcaagaaaca |
296 |
Q |
| |
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| T |
41694316 |
ccacaaattatgagcaatcctatgagtttgacatgccaaaaaaacctttaaaattcaagaaaca |
41694253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 76 - 378
Target Start/End: Original strand, 23158421 - 23158723
Alignment:
| Q |
76 |
acatcatttccaataacagcagtttcaccaaccacaatcccagttgcatgatcaagcaaaatcccacttccaatcttagctccaggatgaatatcaactc |
175 |
Q |
| |
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|||| |||||||| ||||||||||||||||| |||| || ||||||||||| | ||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
23158421 |
acattatttccaaccacagcagtttcaccaacaacaagacctgttgcatgatccaacaaaatccctctaccaatcttagcaccaggatgaatatcaactg |
23158520 |
T |
|
| Q |
176 |
caaaaacttccgaaacgcgattctgaatcataacacccaaaatcttccttccatttgaccacaaattatgagctaccctatgagcttgacatgctaaaaa |
275 |
Q |
| |
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||||||| || ||||| | ||| ||||||| || | || | || ||||| | | |||| || || || |||||||||||||||||||| |||||||| |
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| T |
23158521 |
caaaaacctcagaaaccctattttgaatcaaaagtgctaacacttttcttccttgtaaccataatttgtgtgctaccctatgagcttgacaagctaaaaa |
23158620 |
T |
|
| Q |
276 |
tcctttgaaattcaagaaacaatgaacatgacttatacaagcagggtctctttcattaactgcttttagatcatttttcatagcatacataatttcttta |
375 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||| | ||||| ||||||||||| ||||| |||| | |
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| T |
23158621 |
gcctttgaaattcaacaaacaatgaacatagcttatacaagcagggtctctttctttcactgctttcatatcatctttcatagcatctataatatcttga |
23158720 |
T |
|
| Q |
376 |
tca |
378 |
Q |
| |
|
||| |
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|
| T |
23158721 |
tca |
23158723 |
T |
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