View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_high_9 (Length: 454)
Name: NF2723_high_9
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 55299003 - 55298592
Alignment:
| Q |
16 |
atgaaatgctagatccaacgaaattggatttgtatagcaacaatttgtggatagtaacttgttttcgcacattgcaaacatcttgaacctagtcattcaa |
115 |
Q |
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| T |
55299003 |
atgaaatgctagatccaacgaaattggatttgtatagcaacaatttgtggatagtaacttgttttcgcacattgcaaacatcttgaacctagtcattcaa |
55298904 |
T |
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| Q |
116 |
agacttccaatagaactcatgaattatatcatcaactttatccataagagattcacaaaaagtatcttaattaatccatacaggtaatgtaaagatggac |
215 |
Q |
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| T |
55298903 |
agacttccaatagaactcatgaattatatcatcaactttatccataagagattcacaaaaagtatcttaattaatccatacaggtaatgtaaagatggac |
55298804 |
T |
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| Q |
216 |
attggggaattgaaaagcctgtataccaacaaaatgttaagaacccccctcatttgggggaacatttgggggaatggtatccggtgcagcaagtggatct |
315 |
Q |
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| T |
55298803 |
attggggaattgaaaagcctgtataccaacaaaatgttaagaacccccctcatttggg------------ggaatggtatccggtgcagcaagtggatct |
55298716 |
T |
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| Q |
316 |
tcttcttctccagtttcaggttgttgctcggagggagggggttgttcttcattttcattgttctcaggatggaaattgatggggaacttagtgacccttg |
415 |
Q |
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| T |
55298715 |
tcttcttctccagtttcaggttgttgctcggagggagggggttgttcttcattttcattgttctcaggatggaaattgatggggaacttagtgacccttg |
55298616 |
T |
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| Q |
416 |
gtttatcggataagatgttccttt |
439 |
Q |
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| T |
55298615 |
gtttatcagataagatgttccttt |
55298592 |
T |
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