View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_1 (Length: 710)
Name: NF2723_low_1
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 670; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 14 - 691
Target Start/End: Original strand, 38121647 - 38122324
Alignment:
| Q |
14 |
atcatcacctgcataactatctgaattgtttgaatacttatatgtaggaggaaaatatattttcccttcactccatccggtaaagacacggccttgccgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121647 |
atcatcacctgcataactatctgaattgtttgaatacttatatgtaggaggaaaatatattttcccttcactccatccggtaaagacacggccttgccgt |
38121746 |
T |
|
| Q |
114 |
ttctctatacacagctgaaagaaaaaactatcacatggtcaggtactatatgagaaagaaacatcacagttacttggggggaaaactaacatgcctggtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121747 |
ttctctatacacagctgaaagaaaaaactatcacatggtcaggtactatatgagaaagaaacatcacagttacttggggggaaaactaacatgcctggtc |
38121846 |
T |
|
| Q |
214 |
attctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacgataagaaagtgctatccggtaatttaaatcccccagccaaattatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121847 |
attctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacggtaagaaagtgctatccggtaatttaaatcccccagccaaattatt |
38121946 |
T |
|
| Q |
314 |
cggctacaccaaataaaccataagtttagttcttgaaaattaggattcagttgtgatattcattaagattctcaatttcctagtatcagatatacaatac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38121947 |
cggctacaccaaataaaccataagtttagttcttgaaaattaggattcagttgtgatattcattaagattctcaatttcctagtatcagatatacaatac |
38122046 |
T |
|
| Q |
414 |
tcccccactgtcttaaatataagcaaaaaggtatatgtatttagactacatgcacctacatttttacttatatttaagaccggagacaacatagattagg |
513 |
Q |
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| T |
38122047 |
tcccccactgtcttaaatataagcaaaaaggtatatgtatttagactacatgcacctacatttttacttatatttaagaccggagacaacatagattagg |
38122146 |
T |
|
| Q |
514 |
agtagtgatagatcaagggcatactcatgttccagaattgtctgaggagaatttgcatcggttgtgtcaaggatatgaggaaaccttgtctttctgagaa |
613 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122147 |
agtagagatagatcaagggcatactcatgttccagaattgtctgaggagaatttgcatcggttgtgtcaaggatatgaggaaaccttgtctttctgagaa |
38122246 |
T |
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| Q |
614 |
tctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatgactacagacgaagcaaa |
691 |
Q |
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| T |
38122247 |
tctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatgactacagacgaagcaaa |
38122324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 31830589 - 31830463
Alignment:
| Q |
207 |
cctggtcattctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacgataagaaagtgctatccggtaatttaaatcccccagcca |
306 |
Q |
| |
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|||||||||||| |||||| |||||||| |||||| |||||||||||||||||| |||| |||| ||| || ||||| ||||||||||| |||||||| |
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| T |
31830589 |
cctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgctgcacggtaagtaagggcaatccgataatttaaatctcccagcca |
31830490 |
T |
|
| Q |
307 |
aattattcggctacaccaaataaacca |
333 |
Q |
| |
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| T |
31830489 |
aattattcgactataccaattaaacca |
31830463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 592 - 691
Target Start/End: Complemental strand, 31830334 - 31830235
Alignment:
| Q |
592 |
ggaaaccttgtctttctgagaatctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatgactacagacgaagcaaa |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||| |||||||||||||||||||||| || | |||||||| |
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| T |
31830334 |
ggaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaa |
31830235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 31830763 - 31830690
Alignment:
| Q |
36 |
gaattgtttgaatacttatatgtaggaggaaaatatattttcccttcactccatccggtaaagacacggccttg |
109 |
Q |
| |
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||||||||||||||||||||||| ||||| || ||||||| ||| ||| ||||||| ||||||||| ||||| |
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| T |
31830763 |
gaattgtttgaatacttatatgtgggagggaagtatatttgcccctcattccatccttcaaagacacgaccttg |
31830690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 590 - 635
Target Start/End: Complemental strand, 46764932 - 46764887
Alignment:
| Q |
590 |
gaggaaaccttgtctttctgagaatctccattacatctgaatttct |
635 |
Q |
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||||||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
46764932 |
gaggaaaccttgtctttttaagaatctccataacatcagaatttct |
46764887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 1085933 - 1085856
Alignment:
| Q |
14 |
atcatcacctgcataactatctgaattgtttgaatacttatatgtaggaggaaaatatattttcccttcactccatcc |
91 |
Q |
| |
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|||||| || ||||| |||||||||||| |||||||||||||||| ||||| ||||| || |||||||| ||||||| |
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| T |
1085933 |
atcatctccagcatacctatctgaattggttgaatacttatatgttggagggaaataaatcttcccttctttccatcc |
1085856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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