View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_18 (Length: 308)
Name: NF2723_low_18
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 50861213 - 50860935
Alignment:
| Q |
13 |
atgaagattcagcaacaatctgtgcatcaaacggaacaaaaccttttgatctatcaccattaatcacgttaaccacacgcgattcaagatacatgttaac |
112 |
Q |
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||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
50861213 |
atgaagattcagcaacaatctgtgcatcagatggaacagaaccttttgatctatcaccattaatagcgttaaccacacgcgattcaagatacatgttaac |
50861114 |
T |
|
| Q |
113 |
aatagaaaaaattgtgttaagattcgattctaattttgtgtccagtttaaatagagcaagttcgattcagagatgtagtttgaatgatagaagattgcaa |
212 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50861113 |
agtagaaaaaattgcgttaagattcgattctaattttgtgtccattttaaatggagcaagttcgattcagagatgtagtttgaatgatagaagattgcaa |
50861014 |
T |
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| Q |
213 |
gtagtgcaaattcagagtcacttattctattttaaccaaaaatcaaaacttgtcatttaaaaaccaataaggatgattc |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50861013 |
gtagtgcaaattcagagtcacttattctattttaaccaaaaatcaaaacttgtcacttaaaaaccaataaggatgattc |
50860935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 39073866 - 39073975
Alignment:
| Q |
13 |
atgaagattcagcaacaatctgtgcatcaaacggaacaaaaccttttgatctatcaccattaatcacgttaaccacacgcgattcaagatacatgttaac |
112 |
Q |
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||||||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| || |
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| T |
39073866 |
atgaagattcagccacaatctgtacatcaaacggaacagaaccttttgatctatttccattaagattgttaaccacacacgattcaagatacgcgttgac |
39073965 |
T |
|
| Q |
113 |
aatagaaaaa |
122 |
Q |
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|| ||||||| |
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| T |
39073966 |
aacagaaaaa |
39073975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 25613350 - 25613144
Alignment:
| Q |
13 |
atgaagattcagcaacaatctgtgcatcaaacggaacaaaaccttttgatctatcaccattaatcacg-ttaaccacacgcgattcaa----gatacatg |
107 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||| || || | |||||||||| |||||||| ||||| | |
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| T |
25613350 |
atgaagattcagccacaatctgtacatcaaacggaacataaccttttgatctatcacc-ttgatgagaattaaccacacacgattcaatcaagatacgcg |
25613252 |
T |
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| Q |
108 |
ttaacaatagaaaaaattgtgttaagattcgattctaattttgtgtccagtttaaatagagcaag-ttcgattcagagatgtagtttgaatgatagaaga |
206 |
Q |
| |
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||||||| ||||||| ||| ||||||||||| ||| |||| |||||| |||||| ||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
25613251 |
ttaacaaaagaaaaagttgcgttaagattcgcttcagatttcatgtccattttaaaccgagcaagattcgatttagcgatgtagtttgaatgatagaaga |
25613152 |
T |
|
| Q |
207 |
ttgcaagt |
214 |
Q |
| |
|
|||||||| |
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|
| T |
25613151 |
ttgcaagt |
25613144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 15 - 209
Target Start/End: Original strand, 36588222 - 36588417
Alignment:
| Q |
15 |
gaagattcagcaacaatctgtgcatcaaacggaacaaaaccttttgatctatcaccattaatcacgttaaccacacgcgattcaagatacatgttaacaa |
114 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||| ||||||| |
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| T |
36588222 |
gaagattcagccacaatctgcacatcaaacggaacagaaccttttgatctatcaccattaagagcgtcaaccacacgcgaatcaagataagcgttaacag |
36588321 |
T |
|
| Q |
115 |
tagaaaaaattgtgttaagattcgattctaattttgtgtccagtttaaatagagcaag-ttcgattcagagatgtagtttgaatgatagaagattg |
209 |
Q |
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||||||| | | |||||||||| ||| |||| ||||||| |||||| ||||||| || ||||||| ||||||||| || ||||||||||||| |
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| T |
36588322 |
cagaaaaagtagcattaagattcgcttcagatttcgtgtccattttaaacggagcaagattggattcagcgatgtagttagagtgatagaagattg |
36588417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 13603484 - 13603537
Alignment:
| Q |
238 |
tctattttaaccaaaaatcaaaacttgtcatttaaaaaccaataaggatgattc |
291 |
Q |
| |
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||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
13603484 |
tctattttagccaaaaatcaaaacctgtcacttaaaaaccaataaggatgattc |
13603537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Complemental strand, 32683828 - 32683785
Alignment:
| Q |
248 |
ccaaaaatcaaaacttgtcatttaaaaaccaataaggatgattc |
291 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32683828 |
ccaaaaatcaaaacttgtcacttaaaaaccaataaggatgattc |
32683785 |
T |
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