View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_2 (Length: 666)
Name: NF2723_low_2
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 661
Target Start/End: Original strand, 32259823 - 32260466
Alignment:
| Q |
18 |
cattatgtacaggagcaacctttcagcttctgaaaggtctttgtatccaacaacctattcatttggtatgaagaggcttatgttacaaatccatccatag |
117 |
Q |
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| T |
32259823 |
cattatgtacaggagcaacctttcagcttctgaaaggtctttgtatccaacaacctattcatttggtatgaagaggcttatgttacaaatccatccattg |
32259922 |
T |
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| Q |
118 |
atttatttacttggtgtttgtactttatataagagcttgtcatagatccaaaattccaaatgctgatgaaatttgactgaaaaccaacaatttttctatt |
217 |
Q |
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| T |
32259923 |
atttatttacttggtgtttgtactttatataagagcttgtcatagatcaaaaattcaaaatgctgatgaattttgactgaaaaccaacaatttttctatt |
32260022 |
T |
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| Q |
218 |
taaaaataaattaacgaaaacatgcacttatttaatttaattcctagttacattgccgcctgagtcgcatatactttcacttgtttgaatgttttattta |
317 |
Q |
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| T |
32260023 |
taaaaataaattaacgaaaacatgcacttatttaatttaattcctagttacattgccgcctgagtcgcatatactttcacttgtttgaatgttttattta |
32260122 |
T |
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| Q |
318 |
tttataagattaggctgattaacttggagaatacagtggcaattcaccataattaatgtcgaatcacaaaagtttctggaatgttacgagcttccaacaa |
417 |
Q |
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| T |
32260123 |
tttataagattaggctgattaacttggagaataaagtggcaattcaccataattaatgtcgaatcacaaaagtttctggaatgttacgagcttccaacaa |
32260222 |
T |
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| Q |
418 |
ggccttaaaatcacgcctggatatttgttgtcttgcatattatgtagtcgagattttctgcattgaaggaaattatgtaatatcataatcttgttgtatt |
517 |
Q |
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| T |
32260223 |
ggccttaaaatcacgcctggatatttgttgtcttgcatattatgtagtcgagattttctgcattgaaggaaattatgtaatatcataatcttgttgtatt |
32260322 |
T |
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| Q |
518 |
aaacatggaggtggaaggttgtttaatgttgttttggttaaggaagtttaacaagaccatgtctggcttttagttcatcagatctcaaaattttaaaaag |
617 |
Q |
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| T |
32260323 |
aaacatggaggtggaaggttgtttaatgttgttttggttaaggaagtttaacaagaccatgtctggcttttagttcatcagatctcaaaattttaaaaag |
32260422 |
T |
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| Q |
618 |
tctatttgcttaattcttttgatccaccttcatttcttctcact |
661 |
Q |
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| T |
32260423 |
tctatttgcttccttcttttgatccaccttcatttcttttcact |
32260466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8393383 - 8393452
Alignment:
| Q |
18 |
cattatgtacaggagcaacctttcagcttctgaaaggtctttgtatccaacaacctattcatttggtatg |
87 |
Q |
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|||||| ||||||| ||| |||||||||||||||| ||| | ||||||||| | ||||||||||||||| |
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| T |
8393383 |
cattatatacaggaataacatttcagcttctgaaagatctctctatccaacagcatattcatttggtatg |
8393452 |
T |
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