View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2723_low_23 (Length: 275)

Name: NF2723_low_23
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2723_low_23
NF2723_low_23
[»] chr4 (1 HSPs)
chr4 (11-257)||(41995135-41995378)
[»] chr2 (1 HSPs)
chr2 (196-248)||(42556983-42557035)
[»] chr3 (1 HSPs)
chr3 (202-257)||(27912473-27912528)
[»] chr6 (1 HSPs)
chr6 (202-244)||(11796965-11797007)
[»] chr5 (1 HSPs)
chr5 (202-251)||(33094374-33094423)
[»] chr1 (1 HSPs)
chr1 (199-244)||(18716473-18716518)
[»] chr8 (1 HSPs)
chr8 (195-251)||(32964157-32964213)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 41995135 - 41995378
Alignment:
Q  11 agaaaataggcaaacatccattcgaaattgtaaaattcccgtaaatatcccctacaaatcagagaaaatgcaaaaccgcatgatattattgctaaacatc 110  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||    
T  41995135 agaaaataggcaaacatccattcggaattgtaaaattcctgtaaatatcccctacaaatcagagaaaatgcaaaaccgcatgatatt---gataaacatc 41995231  T
Q  111 tgtaatttgccccctttatcggtctccacccttgcttaacatggcatggtcgttggctgtctatgtggactgaaacgctaggagaaacgaaaattcataa 210  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41995232 tgtaatttgccccctttctcggtctccacccttacttaacatggaatggtcgttggctgtctatgtggactgaaacgctaggagaaacgaaaattcaaaa 41995331  T
Q  211 ttaatttgttacttgtttaaaaactttaaaattttatggtgcatgtt 257  Q
    ||||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  41995332 ttaatttgttactcgttaaaaaacttcaaaatttcatggtgcatgtt 41995378  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 42557035 - 42556983
Alignment:
Q  196 aacgaaaattcataattaatttgttacttgtttaaaaactttaaaattttatg 248  Q
    |||||||| ||||||||| || |||||||||||||||||| ||||||||||||    
T  42557035 aacgaaaaatcataattagttcgttacttgtttaaaaactataaaattttatg 42556983  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 27912473 - 27912528
Alignment:
Q  202 aattcataattaatttgttacttgtttaaaaactttaaaattttatggtgcatgtt 257  Q
    ||||||||||||||||||  || |||||||||||  ||||||| ||||||||||||    
T  27912473 aattcataattaatttgtccctcgtttaaaaactccaaaatttcatggtgcatgtt 27912528  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 11796965 - 11797007
Alignment:
Q  202 aattcataattaatttgttacttgtttaaaaactttaaaattt 244  Q
    ||||||||||||||||||| | |||||||||||| ||||||||    
T  11796965 aattcataattaatttgttccgtgtttaaaaactctaaaattt 11797007  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 33094374 - 33094423
Alignment:
Q  202 aattcataattaatttgttacttgtttaaaaactttaaaattttatggtg 251  Q
    |||||||||||||||| |  || |||||||||||||||||||| ||||||    
T  33094374 aattcataattaatttttctctcgtttaaaaactttaaaatttaatggtg 33094423  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 18716473 - 18716518
Alignment:
Q  199 gaaaattcataattaatttgttacttgtttaaaaactttaaaattt 244  Q
    ||||||||||||||||||||| ||| |||||||||||  |||||||    
T  18716473 gaaaattcataattaatttgtcactcgtttaaaaactccaaaattt 18716518  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 32964213 - 32964157
Alignment:
Q  195 aaacgaaaattcataattaatttgttacttgtttaaaaactttaaaattttatggtg 251  Q
    |||||||||||||||||||||||| |  | ||||||||||| ||||| || ||||||    
T  32964213 aaacgaaaattcataattaatttgcttatcgtttaaaaactctaaaacttaatggtg 32964157  T

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