View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_25 (Length: 250)
Name: NF2723_low_25
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18103863 - 18104102
Alignment:
| Q |
1 |
aaagcagaaacagatgttgaagttggtgactacattattccaaaagatgcacaagttttgatcaatgcatgggttattggtagagacccaaataaatggg |
100 |
Q |
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| T |
18103863 |
aaagcagaaacagatgttgaagttggtgactacattattccaaaagatgcacaagttttgatcaatgcatgggttattggtagagacccaaataaatggg |
18103962 |
T |
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| Q |
101 |
ataatgctaatgtttttgtaccagagaggtttttggatagtgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaat |
200 |
Q |
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| T |
18103963 |
ataatgctaatgtttttgtaccagagaggtttttggatagtgaagttgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaat |
18104062 |
T |
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| Q |
201 |
ttgtcctggtttgcctttggctattagaatattgcctatg |
240 |
Q |
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| T |
18104063 |
ttgtcctggtttgcctttggctattagaatattgcctatg |
18104102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18093855 - 18094094
Alignment:
| Q |
1 |
aaagcagaaacagatgttgaagttggtgactacattattccaaaagatgcacaagttttgatcaatgcatgggttattggtagagacccaaataaatggg |
100 |
Q |
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| T |
18093855 |
aaagcagaaatcgatgttgaaattggtgaatacattattccaaaagatgcacaagtgttggttaatgcatgggtgattggtagagacccaaataaatggg |
18093954 |
T |
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| Q |
101 |
ataatgctaatgtttttgtaccagagaggtttttggatagtgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaat |
200 |
Q |
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| T |
18093955 |
ataatgctaatgtttttataccagaaaggtttttggacaatgaaattgatgttaaaggacatcattttgagcttattccatttgggtctggtagaagaat |
18094054 |
T |
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| Q |
201 |
ttgtcctggtttgcctttggctattagaatattgcctatg |
240 |
Q |
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| T |
18094055 |
ttgtcctggcttgcctttggctattagaatgttgcctatg |
18094094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 23244653 - 23244719
Alignment:
| Q |
144 |
aattgatgttaaaggacatcattttgagcttattccatttgggtctggaagaagaatttgtcctggt |
210 |
Q |
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| T |
23244653 |
aattgatgttaggggacaacattttcaacttctaccatttggatctggaagaagaatgtgtcctggt |
23244719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 23346803 - 23346848
Alignment:
| Q |
164 |
attttgagcttattccatttgggtctggaagaagaatttgtcctgg |
209 |
Q |
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||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
23346803 |
attttgaacttattccatttggtgctggtagaagaatttgtcctgg |
23346848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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