View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_28 (Length: 231)
Name: NF2723_low_28
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 22064625 - 22064733
Alignment:
| Q |
109 |
aactcatgtgattacatttaataattctagtttctaatattattacctatatcgtctcaaac--gccgtgcaattgaatgtaatattgaaggtgtgccga |
206 |
Q |
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| T |
22064625 |
aactcatgtgattacattcaatagttctagtttctaatattattacctatatcgtctcaaacatgccgtgcaattgaatgtaatattgaaggtgtgtcga |
22064724 |
T |
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| Q |
207 |
tgtgaaact |
215 |
Q |
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|||| |||| |
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| T |
22064725 |
tgtgcaact |
22064733 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 22064627 - 22064835
Alignment:
| Q |
1 |
ctcatgtgattacattcaatagttctagtttcgaatattataacttgtgtcgtctataacttaaggtgcaattgaatgtaattttgaaggtgtgtcaata |
100 |
Q |
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| T |
22064627 |
ctcatgtgattacattcaatagttctagtttctaatattattacctatatcgtctcaaacatgccgtgcaattgaatgtaatattgaaggtgtgtcgatg |
22064726 |
T |
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| Q |
101 |
tccaacac-aactcatgt----gattacatttaataattctagtttctaatattattacctatatcgtctcaaac--gccgtgcaattgaatgtaatatt |
193 |
Q |
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| T |
22064727 |
tgcaactcaaacacaagtgatcgattacattcaataatcctagtttctaatattatttcttgtgtcatcttaaacgtgccgtgcatttgaatgtaatatc |
22064826 |
T |
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| Q |
194 |
gaaggtgtg |
202 |
Q |
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||| ||||| |
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| T |
22064827 |
gaacgtgtg |
22064835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 22076065 - 22076135
Alignment:
| Q |
84 |
ttgaaggtgtgtcaatatccaacacaactcatgtgattacatttaataattctagtttctaatattattac |
154 |
Q |
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| T |
22076065 |
ttgaaggtgtgtcgatgaccaacgcaactcatgtgattacattcaataagtctagtttctaaaattattac |
22076135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 22064858 - 22064930
Alignment:
| Q |
99 |
tatccaacacaactcatgtgattacatttaataattctagtttctaatattattacctatatcgtctcaaacg |
171 |
Q |
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|||||| ||||||| |||||| ||||| || ||||||||||||||||||||||| | | |||||||||||| |
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| T |
22064858 |
tatccagcacaacttgtgtgataacattcaacaattctagtttctaatattattatttgtgtcgtctcaaacg |
22064930 |
T |
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