View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_4 (Length: 603)
Name: NF2723_low_4
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 496; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Original strand, 37417071 - 37417633
Alignment:
| Q |
19 |
aaaactaagttgccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagattttccactcatatttcaaagtacaacaccctgatcaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417071 |
aaaactaagttgccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagattttccactcatatttcaaagtacaacaccctgatcaa |
37417170 |
T |
|
| Q |
119 |
attgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttca |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37417171 |
attgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttca |
37417270 |
T |
|
| Q |
219 |
taggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatga |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
37417271 |
taggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtat-----ccgatgaaatttgcacgatcttgtaacatga |
37417365 |
T |
|
| Q |
319 |
ggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaaccct |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417366 |
ggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaaccct |
37417465 |
T |
|
| Q |
419 |
taattagatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaaacactt |
518 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37417466 |
tt----gatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaac-aaacactt |
37417560 |
T |
|
| Q |
519 |
aatactaatatgtggacatgatatagaaaatcatgtgaagcttaaaatcaaatgcacttacatctccattcat |
591 |
Q |
| |
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|| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417561 |
aagactaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37417633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 19 - 591
Target Start/End: Original strand, 37424603 - 37425165
Alignment:
| Q |
19 |
aaaactaagttgccgttttcatcaaaagctccctgatattgtccaagcgcttttaaccaagattttccactcatatttcaaagtacaacaccctgatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37424603 |
aaaactaagttgccgttttcatcaaaagctgcctgatattgtccaagcgcttttaaccaagatttttcactcatatttcaaagtacaacaccctgatcaa |
37424702 |
T |
|
| Q |
119 |
attgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgatcatttaacagaaaaatgaatgacaaagtgatatcttca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37424703 |
attgtagaactcaaagcgattaaaagtacaatacccttcaaattgtagaactgatcaatgattatttaacagaaaaatgaatgacaaagtgatatcttca |
37424802 |
T |
|
| Q |
219 |
taggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtatggtatccaatgaaatttgcacgatcttgtaacatga |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
37424803 |
taggcttttgacccatcctcaattgttatagcaacatccattggtttcggtggcactatggtat-----cctatgaaatttgcacgatcttgtaacatga |
37424897 |
T |
|
| Q |
319 |
ggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaaccct |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37424898 |
ggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgactgggtggagtttgagaaaacattctaaaactgtgaagaggaaaccct |
37424997 |
T |
|
| Q |
419 |
taattagatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaaacactt |
518 |
Q |
| |
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| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37424998 |
tt----gatttctctcctattctcttttgtccgttctcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaac-aaacactt |
37425092 |
T |
|
| Q |
519 |
aatactaatatgtggacatgatatagaaaatcatgtgaagcttaaaatcaaatgcacttacatctccattcat |
591 |
Q |
| |
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|| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37425093 |
aagactaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37425165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 424 - 511
Target Start/End: Original strand, 34317819 - 34317906
Alignment:
| Q |
424 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
511 |
Q |
| |
|
||||||||||||||||||| ||| ||| ||| ||||||||||||||||| ||| ||| ||||| ||||||||||| |||||||||||| |
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| T |
34317819 |
agatttctctcctattctcctttatcctttctcaatctttcaataaaatagttcattattttcaattcaattcttaggttcctaacaa |
34317906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 511
Target Start/End: Original strand, 10057358 - 10057440
Alignment:
| Q |
429 |
tctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
511 |
Q |
| |
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|||||||||||||| ||||||| ||| ||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| |
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| T |
10057358 |
tctctcctattctcgtttgtcctttctcaatctttcaataaaattgttcgttcctttcatatcaattttttggttcctaacaa |
10057440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 7872062 - 7872146
Alignment:
| Q |
424 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaa |
508 |
Q |
| |
|
||||||||||| ||||||| ||| ||| || |||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
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| T |
7872062 |
agatttctctcatattctcatttatcctttatcaatatttcaataaaattgttcattcttttcaattcaatacttgggttcctaa |
7872146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 170
Target Start/End: Original strand, 38358848 - 38358876
Alignment:
| Q |
142 |
aagtacaatacccttcaaattgtagaact |
170 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
38358848 |
aagtacaatacccttcaaattgtagaact |
38358876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 43672413 - 43672464
Alignment:
| Q |
459 |
tctttcaataaaattgtttattcttttccattcaattctttggttcctaaca |
510 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
43672413 |
tctttcaataaaattgtccattcttttccattcaattcttgggttcctaaca |
43672464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 431 - 514
Target Start/End: Original strand, 50891041 - 50891124
Alignment:
| Q |
431 |
tctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaaac |
514 |
Q |
| |
|
||||| |||||| ||| ||| ||| ||||||||||||||||||| | ||| ||||| ||| || |||| ||||||||||||||| |
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| T |
50891041 |
tctcccattctcctttatcctttctcaatctttcaataaaattgctcatttttttcaatttaactcttgggttcctaacaaaac |
50891124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 52127714 - 52127667
Alignment:
| Q |
461 |
tttcaataaaattgtttattcttttccattcaattctttggttcctaa |
508 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| || ||||||||| |
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|
| T |
52127714 |
tttcaataaaattgttgattcttttcaattcaattattgggttcctaa |
52127667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 512
Target Start/End: Original strand, 30029391 - 30029478
Alignment:
| Q |
424 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaa |
512 |
Q |
| |
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||||||||||| |||||| |||| ||| ||| || ||||| ||||||| | || | ||||||| ||||||||| | ||||||||||||| |
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| T |
30029391 |
agatttctctcatattctattttatcctttctcattctttaaataaaactattcactcttttcaattcaattc-tgggttcctaacaaa |
30029478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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