View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_6 (Length: 550)
Name: NF2723_low_6
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Original strand, 38121808 - 38122324
Alignment:
| Q |
15 |
catcacagttacttggggggaaaactaacatgcctggtcattctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacgataagaa |
114 |
Q |
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| T |
38121808 |
catcacagttacttggggggaaaactaacatgcctggtcattctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacggtaagaa |
38121907 |
T |
|
| Q |
115 |
agtgctatccggtaatttaaatcccccagccaaattattcggctacaccaaataaaccataagtttagttcttgaaaattaggattcagttgtgatattc |
214 |
Q |
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| T |
38121908 |
agtgctatccggtaatttaaatcccccagccaaattattcggctacaccaaataaaccataagtttagttcttgaaaattaggattcagttgtgatattc |
38122007 |
T |
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| Q |
215 |
attaagattctcaatttcctagtatcagatatacaatactcccccactgtcttaaatataagcaaaaaggtatatgtatttagactacatgcacctacat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38122008 |
attaagattctcaatttcctagtatcagatatacaatactcccccactgtcttaaatataagcaaaaaggtatatgtatttagactacatgcacctacat |
38122107 |
T |
|
| Q |
315 |
ttttacttatatttaagaccggagacaacatagattaggagtagtgatagatcaagggcatactcatgttccagaattgtctgaggagaatttgcatcgg |
414 |
Q |
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| T |
38122108 |
ttttacttatatttaagaccggagacaacatagattaggagtagagatagatcaagggcatactcatgttccagaattgtctgaggagaatttgcatcgg |
38122207 |
T |
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| Q |
415 |
ttgtgtcaaggatatgaggaaaccttgtctttctgagaatctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatg |
514 |
Q |
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| T |
38122208 |
ttgtgtcaaggatatgaggaaaccttgtctttctgagaatctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatg |
38122307 |
T |
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| Q |
515 |
actacagacgaagcaaa |
531 |
Q |
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| T |
38122308 |
actacagacgaagcaaa |
38122324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 47 - 173
Target Start/End: Complemental strand, 31830589 - 31830463
Alignment:
| Q |
47 |
cctggtcattctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacgataagaaagtgctatccggtaatttaaatcccccagcca |
146 |
Q |
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| T |
31830589 |
cctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgctgcacggtaagtaagggcaatccgataatttaaatctcccagcca |
31830490 |
T |
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| Q |
147 |
aattattcggctacaccaaataaacca |
173 |
Q |
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| T |
31830489 |
aattattcgactataccaattaaacca |
31830463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 432 - 531
Target Start/End: Complemental strand, 31830334 - 31830235
Alignment:
| Q |
432 |
ggaaaccttgtctttctgagaatctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatgactacagacgaagcaaa |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||| |||||||||||||||||||||| || | |||||||| |
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| T |
31830334 |
ggaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaa |
31830235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 475
Target Start/End: Complemental strand, 46764932 - 46764887
Alignment:
| Q |
430 |
gaggaaaccttgtctttctgagaatctccattacatctgaatttct |
475 |
Q |
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||||||||||||||||| | ||||||||||| ||||| |||||||| |
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| T |
46764932 |
gaggaaaccttgtctttttaagaatctccataacatcagaatttct |
46764887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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