View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2723_low_9 (Length: 470)
Name: NF2723_low_9
Description: NF2723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2723_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 461
Target Start/End: Original strand, 1868477 - 1868897
Alignment:
| Q |
20 |
atagaagcatccttgcaagctagaagcactaatttggaatcagtttcgagccataggttcatccaatgatcagcaacaactagttcaatagcaataatga |
119 |
Q |
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| T |
1868477 |
atagaagcatccttgcaagccagaagcactaatttggaatcagtttcgagccataggttcatccaatgattagcaacagctagttcaatagcaacaatga |
1868576 |
T |
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| Q |
120 |
cagcaaaaatttcagcaaagaaagcagaagtgcaatttggagaaagcagaagtgcaatttgggatatcttgagcaaaacagccaatgcaagctcccatag |
219 |
Q |
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| T |
1868577 |
cagcaaaaatttcagcaaa----------------------gaaagcagaagtgcaatttgggatatcttgagcaaaacagccaatgcaagctcccatag |
1868654 |
T |
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| Q |
220 |
cgtctctaactatgcctccacaagcagctttagctgaattttttatgtaggctccatcagtgttaatcttgagccaattgaagagaggagggatccataa |
319 |
Q |
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| T |
1868655 |
cgtctctaactatgcctccacaagcagctttagctgaattttttatgtaggctccatcagtgttaatcttgagccaattgaagagaggagggatccataa |
1868754 |
T |
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| Q |
320 |
aacttcaatgatgagaggagcctttggagggtggatgttaatgttcaaagctttaagga-tgcaaaatccggtcatgttgactgaagaacaaagtttagt |
418 |
Q |
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| T |
1868755 |
aacttcaatgatgagaggagcctttggagggtggatgttaatgttcaaagctttaaggattgcaaaattcggtcatgttgactgaagaacaaagtttagt |
1868854 |
T |
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| Q |
419 |
agtgttccctgtcatggaaacattagcaattatagtgatgatg |
461 |
Q |
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| T |
1868855 |
agtgttccctgtcatggaaacattagcaattatagtgatgatg |
1868897 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 4102601 - 4102685
Alignment:
| Q |
23 |
gaagcatccttgcaagctagaagcactaatttggaatcagtttcgagccat---aggttcatccaatgatcagcaacaactagtt |
104 |
Q |
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| T |
4102601 |
gaagtatccttacaagccagaagcactaatttggaatcggtttcgagccataggaggttcatccaatgattatcaacagctagtt |
4102685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 24679230 - 24679178
Alignment:
| Q |
300 |
aagagaggagggatccataaaacttcaatgatgagaggagcctttggagggtg |
352 |
Q |
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| T |
24679230 |
aagataggagggttccataaaacttcaatgatttgaggtgccttaggagggtg |
24679178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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