View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2724_high_13 (Length: 290)
Name: NF2724_high_13
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_13 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 6170687 - 6170971
Alignment:
| Q |
7 |
gtgagatgaaggagactaagctcaagcaaataatcaatttaatgtgacatctttttaatttttaaaatgcaagacacgggttgtggcaaattgaactttg |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6170687 |
gtgaaatgaaggagactaagctcaagcaaataatcaatttaatgtgacatctttttaatttttaaaatgcaagacacgggttgtggcaaattgaactttg |
6170786 |
T |
|
| Q |
107 |
tagacacaaaaaatgactataaaggtggggtggttcaatcaaaaacttcggtggaaatttgtcattagccaagtgagtagatcatatgca-ttttttaat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6170787 |
tagacacaaaaaatgactataaaggtggggtggttcaatcaaaaacttcggtggaaatttgtcattagccaagtgagtagatcatatgcatttttttaat |
6170886 |
T |
|
| Q |
206 |
tataaacaaaatatacatnnnnnnnnnnnnnnntacgaagagtacaagaaataatcgaaacaatatacaacaaaatggaaaatag |
290 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6170887 |
tataaacaaaatatacataaaaaaacaaaaaaatacgaagagtacaagaaataatcgaaacaatatacaacaaaatggaaaatag |
6170971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University