View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_high_14 (Length: 258)
Name: NF2724_high_14
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 75 - 244
Target Start/End: Complemental strand, 23011989 - 23011820
Alignment:
| Q |
75 |
tgaatcaagaaggtttgacatatgtgttgtcctctcgaaacttagcaatttgacttcgaatcatttgctcgacatggggttgaacaaacatgtgagtact |
174 |
Q |
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| T |
23011989 |
tgaatcaagaaggtttgacatatgtgttgtcctctcgaaacttagcaatttgacttcgaatcatttgctcgacatggggttgaacaaacatgtgagtact |
23011890 |
T |
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| Q |
175 |
atccaatatatgtattatgaatttgtcagatgtagggaatgaagcattcattttaatgataaattgagcc |
244 |
Q |
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| T |
23011889 |
atccaatatatgtattatgaatttgtcggatgtagggaatgaagcattcattttaatgataaattgagcc |
23011820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 23017598 - 23017413
Alignment:
| Q |
59 |
catatagtcttgagattgaatcaagaaggtttgacatatgtgttgtcctctcgaaacttagcaatttgacttcgaatcatttgctcgacatggggttgaa |
158 |
Q |
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| T |
23017598 |
catatagtcctgagattgaatcaagaaggtttgacgtatgtgttgtcctctcggaactttgcaatttgacttcgaatcatttgctcgacatggggttgaa |
23017499 |
T |
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| Q |
159 |
caaacatgtgagtactatccaatatatgtattatgaatttgtcagatgtagggaatgaagcattcattttaatgataaattgagcc |
244 |
Q |
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| T |
23017498 |
caaacatgtgtgtactatccaatatatgtattatgaatttgtcagatgcaggcagtgaagcattcatattgacgatatattgagcc |
23017413 |
T |
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