View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_high_23 (Length: 241)
Name: NF2724_high_23
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 38117350 - 38117538
Alignment:
| Q |
20 |
catgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaaca |
119 |
Q |
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| T |
38117350 |
catgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaaca |
38117449 |
T |
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| Q |
120 |
cgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
208 |
Q |
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| T |
38117450 |
cgagtacaggaccgtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgtta |
38117538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 38161156 - 38161308
Alignment:
| Q |
22 |
tgagtcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacg |
121 |
Q |
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| T |
38161156 |
tgagtcatggcatttggttactcttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa---- |
38161250 |
T |
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| Q |
122 |
agtacaggaccg-tgtttcttgaattctgtaagtgctgcatggtaaaa-agatgcagtagta |
181 |
Q |
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| T |
38161251 |
---acaagaccaatgtttcttgaattatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
136 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
185 |
Q |
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| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 49005158 - 49005245
Alignment:
| Q |
26 |
tcatgacatatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttca |
113 |
Q |
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| T |
49005158 |
tcatgacatttggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatttca |
49005245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 208
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
169 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
208 |
Q |
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| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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