View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2724_high_24 (Length: 240)

Name: NF2724_high_24
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2724_high_24
NF2724_high_24
[»] chr5 (3 HSPs)
chr5 (77-218)||(685609-685751)
chr5 (167-222)||(3102114-3102170)
chr5 (163-222)||(4674798-4674858)
[»] chr8 (1 HSPs)
chr8 (163-222)||(22426453-22426513)
[»] chr6 (2 HSPs)
chr6 (163-222)||(9064918-9064978)
chr6 (161-189)||(4844231-4844259)
[»] chr4 (6 HSPs)
chr4 (163-222)||(15640426-15640486)
chr4 (163-222)||(46799459-46799519)
chr4 (166-223)||(46222879-46222936)
chr4 (158-209)||(31480336-31480388)
chr4 (163-222)||(53354949-53355009)
chr4 (163-222)||(56546432-56546492)
[»] chr2 (2 HSPs)
chr2 (163-222)||(2304342-2304402)
chr2 (163-222)||(34034402-34034462)
[»] chr1 (3 HSPs)
chr1 (158-200)||(12675721-12675764)
chr1 (163-222)||(4616925-4616985)
chr1 (163-222)||(21884627-21884687)
[»] chr7 (3 HSPs)
chr7 (158-222)||(31475818-31475883)
chr7 (161-211)||(35578284-35578336)
chr7 (163-222)||(22965941-22966001)
[»] scaffold0308 (1 HSPs)
scaffold0308 (163-222)||(7128-7188)
[»] chr3 (3 HSPs)
chr3 (163-222)||(9625035-9625095)
chr3 (162-202)||(22854667-22854707)
chr3 (163-222)||(36331709-36331769)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 685751 - 685609
Alignment:
Q  77 gaaatgttcttctgactcgctatgtcgcaggttaaattcatacacgattaggtgtttttcgttgttctaata-nnnnnnnnngttaagtagtctagtggt 175  Q
    ||||||||||| ||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||| |||          |||||||||| |||| ||    
T  685751 gaaatgttcttgtgactggctatgtcgcaagataaattcatacacaattaggtgtttttcgttgttcttatatttttttttggttaagtagtttagtagt 685652  T
Q  176 tagaattcacttttaaagtaaataaattgggtgtctgcggttc 218  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  685651 tagaattcacttttaaagtaaataaattggatgtttgcggttc 685609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 222
Target Start/End: Original strand, 3102114 - 3102170
Alignment:
Q  167 tctagtggttagaattcacttt-taaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||  | |||||||||    
T  3102114 tctagtggctagaattcactttataaagtaaataaatggggtgttcggggttcgaac 3102170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 4674798 - 4674858
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    ||||| |||||||||||| |||||||||||||| ||||| | ||||||| | |||||||||    
T  4674798 gtagtttagtggttagaaattcacttttaaagtgaataagtggggtgtccggggttcgaac 4674858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 22426513 - 22426453
Alignment:
Q  163 gtagtctagtggtta-gaattcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| |||||||||| ||||||||||||||||| ||||||| ||||||| | |||||||||    
T  22426513 gtagcctagtggttaagaattcacttttaaagtgaataaatggggtgtcaggggttcgaac 22426453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 9064978 - 9064918
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| ||||||| ||||| |||||||||||||||||||| | ||||||||| |||||||||    
T  9064978 gtagcctagtggctagaaattcacttttaaagtaaataagtggggtgtctggggttcgaac 9064918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 4844259 - 4844231
Alignment:
Q  161 aagtagtctagtggttagaattcactttt 189  Q
    |||||||||||||||||||||||||||||    
T  4844259 aagtagtctagtggttagaattcactttt 4844231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 15640426 - 15640486
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| ||||| |||||||||||||| ||||| | ||||||||| |||||||||    
T  15640426 gtagtctagtggctagaaattcacttttaaagtgaataagtggggtgtctgaggttcgaac 15640486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 46799519 - 46799459
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||||    
T  46799519 gtagtctagtggctagaaattcacttttaaagtgaataaatggggtgtccggggttcgaac 46799459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Original strand, 46222879 - 46222936
Alignment:
Q  166 gtctagtggttagaattcacttttaaagtaaataaattgggtgtctgcggttcgaact 223  Q
    |||||||||||  |||||||||||||||| ||||||| |||| ||||  |||||||||    
T  46222879 gtctagtggttgaaattcacttttaaagtgaataaatagggtatctggagttcgaact 46222936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 209
Target Start/End: Complemental strand, 31480388 - 31480336
Alignment:
Q  158 gttaagtagtctagtggttagaattcac-ttttaaagtaaataaattgggtgt 209  Q
    |||||||||||||||||||||||||||| |||||| || ||||| | ||||||    
T  31480388 gttaagtagtctagtggttagaattcacgttttaaggtgaataagtggggtgt 31480336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 53354949 - 53355009
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| ||||||||||||| |||| ||||||||||||||| | ||||||| | |||||||||    
T  53354949 gtagcctagtggttagaaattcatttttaaagtaaataagtggggtgtccggggttcgaac 53355009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 56546432 - 56546492
Alignment:
Q  163 gtagtctagtggttagaattcac-ttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| ||||||| |||||||||| ||||||||| ||||| | ||||||||| |||||||||    
T  56546432 gtagcctagtggctagaattcactttttaaagtgaataagtggggtgtctgtggttcgaac 56546492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 2304402 - 2304342
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| ||||||||||||| |||||||||||||||||||| | ||||||| | |||||||||    
T  2304402 gtagcctagtggttagaaattcacttttaaagtaaataagtggggtgtccggggttcgaac 2304342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 34034462 - 34034402
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| ||||| |||||||||||||| ||||| | ||||||| | |||||||||    
T  34034462 gtagtctagtggctagaaattcacttttaaagtgaataagtggggtgtccggggttcgaac 34034402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 12675721 - 12675764
Alignment:
Q  158 gttaagtagtctagtggttag-aattcacttttaaagtaaataa 200  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  12675721 gttaagtagtctagtggttagaaattcacttttaaagtgaataa 12675764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 4616985 - 4616925
Alignment:
Q  163 gtagtctagtggttagaattcacttt-taaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| ||||||||||||| ||| || ||||| | ||||||||| |||||||||    
T  4616985 gtagtctagtggctagaattcactttataaggtgaataagtggggtgtctgtggttcgaac 4616925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 21884687 - 21884627
Alignment:
Q  163 gtagtctagtggttagaattca-cttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||||||||||||| ||| ||| || ||||| | ||||||||| |||||||||    
T  21884687 gtagtctagtggttagaattcaccttataaggtgaataagtggggtgtctggggttcgaac 21884627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 31475818 - 31475883
Alignment:
Q  158 gttaagtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| |||||||||||| ||||| |||||||||||||| ||||| | ||||||| | |||||||||    
T  31475818 gttaggtagtctagtggctagaaattcacttttaaagtgaataagtggggtgtcaggggttcgaac 31475883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 35578284 - 35578336
Alignment:
Q  161 aagtagtctagtggttagaattcac--ttttaaagtaaataaattgggtgtct 211  Q
    ||||||| |||||||||||||||||  ||||||||||||||| | ||||||||    
T  35578284 aagtagtttagtggttagaattcacttttttaaagtaaataagtggggtgtct 35578336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 22965941 - 22966001
Alignment:
Q  163 gtagtctagtggttagaattca-cttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||||||||||||| ||| ||| || ||||| | ||||||||| |||||||||    
T  22965941 gtagtctagtggttagaattcaccttataaggtgaataagtggggtgtctggggttcgaac 22966001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 7188 - 7128
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||| ||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||||    
T  7188 gtagcctagtggctagaaattcacttttaaagtgaataaatggggtgtccggggttcgaac 7128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 9625095 - 9625035
Alignment:
Q  163 gtagtctagtggttagaa-ttcacttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| ||||| |||||||||||||| ||||| | ||||||| | |||||||||    
T  9625095 gtagtctagtggctagaaattcacttttaaagtgaataagtggggtgtccggggttcgaac 9625035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 22854707 - 22854667
Alignment:
Q  162 agtagtctagtggttagaattcacttttaaagtaaataaat 202  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  22854707 agtagtctagtggttggaattcatttttaaagtgaataaat 22854667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 36331709 - 36331769
Alignment:
Q  163 gtagtctagtggttagaattcac-ttttaaagtaaataaattgggtgtctgcggttcgaac 222  Q
    |||||||||||| |||||||||| ||||||||| ||||| | ||||||| | |||||||||    
T  36331709 gtagtctagtggctagaattcactttttaaagtgaataagtggggtgtccggggttcgaac 36331769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University