View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2724_high_29 (Length: 204)

Name: NF2724_high_29
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2724_high_29
NF2724_high_29
[»] chr4 (21 HSPs)
chr4 (17-186)||(4361149-4361318)
chr4 (17-186)||(4344718-4344887)
chr4 (15-143)||(4320502-4320630)
chr4 (15-148)||(4123817-4123950)
chr4 (17-148)||(4335417-4335548)
chr4 (17-148)||(6498404-6498535)
chr4 (22-148)||(6675780-6675906)
chr4 (17-142)||(6621391-6621516)
chr4 (17-148)||(6545326-6545457)
chr4 (17-148)||(6753032-6753163)
chr4 (30-148)||(6758809-6758927)
chr4 (26-148)||(6588074-6588196)
chr4 (17-148)||(6728478-6728609)
chr4 (17-147)||(6532111-6532241)
chr4 (17-142)||(6651139-6651264)
chr4 (28-124)||(6822774-6822870)
chr4 (17-148)||(6815542-6815673)
chr4 (17-148)||(7885269-7885400)
chr4 (92-148)||(4133292-4133348)
chr4 (17-138)||(6837346-6837467)
chr4 (17-53)||(6761364-6761400)
[»] chr6 (23 HSPs)
chr6 (23-148)||(5354492-5354617)
chr6 (17-146)||(5690039-5690168)
chr6 (33-148)||(5066572-5066687)
chr6 (23-146)||(5344939-5345062)
chr6 (23-148)||(5073786-5073911)
chr6 (38-146)||(5397043-5397151)
chr6 (31-148)||(5157506-5157623)
chr6 (25-146)||(5243793-5243914)
chr6 (17-148)||(5096780-5096911)
chr6 (31-154)||(5128289-5128412)
chr6 (23-146)||(5176817-5176940)
chr6 (23-148)||(5102492-5102617)
chr6 (23-146)||(5278644-5278767)
chr6 (23-148)||(5181805-5181930)
chr6 (23-148)||(5383404-5383529)
chr6 (31-148)||(5425996-5426113)
chr6 (32-148)||(5370658-5370774)
chr6 (50-148)||(5434140-5434238)
chr6 (60-148)||(5447702-5447790)
chr6 (33-148)||(5350482-5350591)
chr6 (23-148)||(5284267-5284392)
chr6 (61-135)||(5179657-5179731)
chr6 (61-135)||(5281416-5281490)
[»] chr5 (5 HSPs)
chr5 (31-148)||(8877695-8877812)
chr5 (15-144)||(20838702-20838831)
chr5 (15-144)||(20812347-20812476)
chr5 (60-144)||(12599054-12599138)
chr5 (78-146)||(30417953-30418021)
[»] scaffold0294 (1 HSPs)
scaffold0294 (24-148)||(8778-8902)
[»] chr7 (3 HSPs)
chr7 (23-154)||(36213701-36213832)
chr7 (24-149)||(18935465-18935590)
chr7 (47-160)||(34724452-34724565)
[»] scaffold0286 (1 HSPs)
scaffold0286 (17-142)||(6731-6856)
[»] chr8 (11 HSPs)
chr8 (35-144)||(3262629-3262737)
chr8 (15-144)||(31175917-31176046)
chr8 (80-146)||(3407323-3407389)
chr8 (50-146)||(3391536-3391632)
chr8 (30-145)||(3286516-3286631)
chr8 (38-143)||(3314951-3315056)
chr8 (50-146)||(3364274-3364370)
chr8 (48-143)||(3325003-3325098)
chr8 (38-144)||(3398522-3398628)
chr8 (47-146)||(3267198-3267297)
chr8 (47-144)||(7164654-7164751)
[»] chr3 (6 HSPs)
chr3 (86-148)||(47986750-47986812)
chr3 (86-148)||(47996037-47996099)
chr3 (86-148)||(48005324-48005386)
chr3 (86-148)||(48014609-48014671)
chr3 (34-146)||(6905806-6905918)
chr3 (35-146)||(32411083-32411194)
[»] scaffold0813 (1 HSPs)
scaffold0813 (17-142)||(4710-4835)
[»] scaffold0468 (1 HSPs)
scaffold0468 (83-146)||(6146-6209)
[»] chr2 (1 HSPs)
chr2 (71-146)||(22584094-22584169)
[»] scaffold0373 (1 HSPs)
scaffold0373 (17-138)||(9762-9883)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 4361149 - 4361318
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4361149 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 4361248  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtc 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4361249 ctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtc 4361318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 4344718 - 4344887
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4344718 actgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 4344817  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtc 186  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4344818 ctatcatttggtcttggatgtcaccaacaaatggtctctcgcccacttttcaaacaactgctgggatgtc 4344887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 4320630 - 4320502
Alignment:
Q  15 atactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcc 114  Q
    ||||||||||||||||||| ||||||||| | ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4320630 atactggtataacaaaagttcccttttcattagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttcc 4320531  T
Q  115 ttctatcatttcgtcttggatgtcaccaa 143  Q
    ||||||||||| |||||||||||||||||    
T  4320530 ttctatcatttggtcttggatgtcaccaa 4320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 4123950 - 4123817
Alignment:
Q  15 atactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcc 114  Q
    |||||| |||||||||||| ||||||||  | ||||| |||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  4123950 atactgctataacaaaagtgcccttttcggtagtaaggtcaaaaagcattggatttatttctctgtgtggatatgaaggattctctcgtgatgtgtttcc 4123851  T
Q  115 ttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||||||||||||||||| ||||||||||    
T  4123850 ttctatcatttcgtcttggatgttaccaacaaat 4123817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 4335417 - 4335548
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    ||||||||||||||||| ||||||||| | ||||  |||||| ||||||| | ||| ||||||||||| |||||||||||||| ||||||||||||||||    
T  4335417 actggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatgaaggattctcccgtgatgtgtttcctt 4335516  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    |||| |||| ||||||||||  ||||||||||    
T  4335517 ctataatttggtcttggatggtaccaacaaat 4335548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 6498535 - 6498404
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| ||||||||||| |||||||||||| |||||||||  ||||||||  |||||| | ||||||| ||||||||||| |||||||    
T  6498535 actgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttctttaggtggatttaaaggattttcacgtgatgtatttcctt 6498436  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    || |||||  |||||||||||||||| |||||    
T  6498435 ctctcattcggtcttggatgtcaccatcaaat 6498404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 6675780 - 6675906
Alignment:
Q  22 tataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatc 121  Q
    ||||| |||||| ||||||||||| |||||||||||  |||||||||| || ||||| ||||| | ||||||||| |||| |||||| ||||||||| ||    
T  6675780 tataataaaagttcccttttcaatagtaagatcaaagagcattggattcatctctttatgtggctttgaaggattttcacttgatgtatttccttctctc 6675879  T
Q  122 atttcgtcttggatgtcaccaacaaat 148  Q
    |||  |||||||||||||||| |||||    
T  6675880 attaagtcttggatgtcaccatcaaat 6675906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 6621516 - 6621391
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| ||||||||||| ||| |||| |||  |||||||| ||||||||| ||||||| ||||||||| ||||| |||||||||||||    
T  6621516 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6621417  T
Q  117 ctatcatttcgtcttggatgtcacca 142  Q
    |  | |||   |||||||||||||||    
T  6621416 cacttattcgctcttggatgtcacca 6621391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 6545457 - 6545326
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| ||||||||||| || ||||  ||| ||||||||| |||||||||  |||| | ||||||||| ||||||||||| || ||||    
T  6545457 actgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6545358  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    || |||||  ||||||| |||||||| |||||    
T  6545357 ctctcattcggtcttggctgtcaccatcaaat 6545326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 6753032 - 6753163
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| ||||||||||| |||||||  ||| ||||||||| |||||||||  |||| | ||||||||| ||||||||||| || ||||    
T  6753032 actgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6753131  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    || |||||  ||||||||| || ||| |||||    
T  6753132 ctctcattcggtcttggatatcgccatcaaat 6753163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 6758809 - 6758927
Alignment:
Q  30 aagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtc 129  Q
    |||||||| |||||||  |||||| |||| ||||| ||||||||||| ||||||| | |||||||||  |||||||| | ||||||| | |||||  |||    
T  6758809 aagtacccatttcaatattaagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgtgatatatttccttttgtcattcggtc 6758908  T
Q  130 ttggatgtcaccaacaaat 148  Q
    | |||||||||||||||||    
T  6758909 taggatgtcaccaacaaat 6758927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 6588196 - 6588074
Alignment:
Q  26 acaaaagtacccttttcaattgtaag-atcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatt 124  Q
    |||||||| || |||||||| ||||| || |||| ||||||||| ||||||||| ||||| | ||||||||| ||||||||||| || |||||| |||||    
T  6588196 acaaaagtgccattttcaatagtaaggatgaaaa-gcattggatatatttctttttgtggctttgaaggattttcacgtgatgtattcccttctctcatt 6588098  T
Q  125 tcgtcttggatgtcaccaacaaat 148  Q
      |||||||||||| ||| |||||    
T  6588097 cggtcttggatgtcgccatcaaat 6588074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 6728478 - 6728609
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| || |||||||| |||||||  ||| | ||||||| |||||||||  |||| | ||||||||| ||||||||||| || ||||    
T  6728478 actgctataacaaaagtgccattttcaatagtaagattgaaaagtattggatatatttcttttcgtggctttgaaggattttcacgtgatgtattccctt 6728577  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    || |  ||| |||||||||||| ||| |||||    
T  6728578 ctcttgtttggtcttggatgtcgccatcaaat 6728609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 6532241 - 6532111
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||| || |||| ||||||||||| |||||| |||||  ||||| || ||||||| | || || | ||||||||| |||  |||||| |||||||    
T  6532241 actgctatagcagaagtccccttttcaatagtaagaccaaaaaacattgaatatatttctatttgcggctttgaaggattttcaaatgatgtatttcctt 6532142  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaa 147  Q
    ||||||||  |||||||||||||||| ||||    
T  6532141 ctatcattcggtcttggatgtcaccatcaaa 6532111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 6651139 - 6651264
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| || |||||||| ||||||| || |  |||||||| ||||||| | ||||| | ||||||||| ||||| ||||| |||||||    
T  6651139 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttcctt 6651238  T
Q  117 ctatcatttcgtcttggatgtcacca 142  Q
     | || ||  ||||||||||||||||    
T  6651239 ttctcgttcggtcttggatgtcacca 6651264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 6822774 - 6822870
Alignment:
Q  28 aaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatt 124  Q
    |||||| || |||||||| |||||||  ||| ||||||||| ||||||||| || || | ||||||||| ||||||||||| || |||||| |||||    
T  6822774 aaaagtgccattttcaatagtaagattgaaaagcattggatatatttctttatgcggctttgaaggattttcacgtgatgtattcccttctctcatt 6822870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 6815542 - 6815673
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| ||||| |||||| || |||||| | |||||||  ||| ||||||||| |||||||||  |||| | |||||||||  |||||||||| ||| |||    
T  6815542 actgctataaaaaaagtgccattttcagtggtaagattgaaaagcattggatatatttctttaggtggctttgaaggatttacacgtgatgtattttctt 6815641  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    || || ||   ||||||||||||||| |||||    
T  6815642 ctctcgttcgctcttggatgtcaccatcaaat 6815673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 7885400 - 7885269
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| ||| |||| ||| |||||| || | |||||||||||| |||||| |||||||||| | ||||| ||| ||||||   |||||   ||||||||||    
T  7885400 actgctatcacaagagtgccctttgcagtagtaagatcaaaaagcattgcatttatttctctatgtggttataaaggatctgcacgtagagtgtttcctt 7885301  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    |||| |||  ||||||| |||| |||||||||    
T  7885300 ctattattcagtcttggctgtctccaacaaat 7885269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 4133348 - 4133292
Alignment:
Q  92 ggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    |||| ||||||||| || |||||||||||||||  | ||||||||||||||||||||    
T  4133348 ggatactcacgtgaagtatttccttctatcattcagacttggatgtcaccaacaaat 4133292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 6837346 - 6837467
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| ||||| |||||| || |||||||| ||||||   |||  |||||||| |||||||||  | || | ||||||||| ||||||||||| || ||||    
T  6837346 actgctataaaaaaagttccattttcaatagtaagaatgaaaaacattggatatatttctttaagcggctttgaaggattttcacgtgatgtattccctt 6837445  T
Q  117 ctatcatttcgtcttggatgtc 138  Q
    || |||||   |||||||||||    
T  6837446 ctctcattcgctcttggatgtc 6837467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 6761364 - 6761400
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagat 53  Q
    |||| |||||||||||| |||||||||||||||||||    
T  6761364 actgctataacaaaagtgcccttttcaattgtaagat 6761400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 5354617 - 5354492
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||||||||| ||||| || || || ||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  5354617 ataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaaggattctcacgtgatgtgtttccatctatca 5354518  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    ||| ||||||||||||||||||||||    
T  5354517 tttggtcttggatgtcaccaacaaat 5354492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 5690168 - 5690039
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    ||||| |||||||  || ||||||||||||||||| |||||| ||||||| | ||||||| |||| ||| |||||||||||||||||||| | ||||| |    
T  5690168 actggaataacaagtgtgcccttttcaattgtaaggtcaaaaagcattgggtatatttctctgtgcggacatgaaggattctcacgtgatatatttccat 5690069  T
Q  117 ctatcatttcgtcttggatgtcaccaacaa 146  Q
    ||||||||| ||||||||||||||||||||    
T  5690068 ctatcatttggtcttggatgtcaccaacaa 5690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 5066687 - 5066572
Alignment:
Q  33 tacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttg 132  Q
    ||||||||||| | ||||| |||||| |||||||||  || |||||||| || |||||||||||||| |||||||||||||| |||||||||| ||||||    
T  5066687 tacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcgcgtgatgtgtttccatctatcattttgtcttg 5066588  T
Q  133 gatgtcaccaacaaat 148  Q
    ||||||||||||||||    
T  5066587 gatgtcaccaacaaat 5066572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 5344939 - 5345062
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||||||| ||||||| | | ||||| |||||| ||||||||| ||||||| ||||||| ||||||||||||||||| ||||| ||||| |||||||    
T  5344939 ataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaaggattctcacgcgatgtatttccatctatca 5345038  T
Q  123 tttcgtcttggatgtcaccaacaa 146  Q
    | | ||||||||||||||||||||    
T  5345039 tctggtcttggatgtcaccaacaa 5345062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 5073911 - 5073786
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||||||||| | ||||| || ||| ||||||||| |||||||||||| || |||||||||||||||||||||||||| || || ||||    
T  5073911 ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatgaaggattctcacgtgatgtgttcccatcgatca 5073812  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    ||| ||||||||||||||| ||||||    
T  5073811 tttggtcttggatgtcaccgacaaat 5073786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 38 - 146
Target Start/End: Original strand, 5397043 - 5397151
Alignment:
Q  38 ttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 137  Q
    ||||||||| |||| | |||| ||||||||||||| |||||||| |||||||||||||| ||| |||| ||||||||  |||||||||||||||||||||    
T  5397043 ttttcaattttaaggttaaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttccagctatcatttcgtcttggatgt 5397142  T
Q  138 caccaacaa 146  Q
    |||||||||    
T  5397143 caccaacaa 5397151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 5157623 - 5157506
Alignment:
Q  31 agtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtct 130  Q
    ||||||||||||| | ||||| |||||| |||||||||  || |||||| | || ||||||||||| || |||||||||||||| |||||||||| ||||    
T  5157623 agtacccttttcagtagtaaggtcaaaaagcattggatacatctctttgggcggctatgaaggattttctcgtgatgtgtttccatctatcatttggtct 5157524  T
Q  131 tggatgtcaccaacaaat 148  Q
    ||||||||||||||||||    
T  5157523 tggatgtcaccaacaaat 5157506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 5243914 - 5243793
Alignment:
Q  25 aacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatt 124  Q
    ||||| ||| ||||||||| | ||||| |||||| |||| |||| ||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||||     
T  5243914 aacaagagtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacgcgatgtatttccatctatcatc 5243815  T
Q  125 tcgtcttggatgtcaccaacaa 146  Q
    | ||||||||||||||||||||    
T  5243814 tggtcttggatgtcaccaacaa 5243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 5096780 - 5096911
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    ||||| |||| || ||||||||||||| | ||||| |||||| |||||||||  |||||| | |||||  |||||||||| ||||||||||||||||| |    
T  5096780 actggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatgaaggattttcacgtgatgtgtttccgt 5096879  T
Q  117 ctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||| | ||||||| ||||||||||||||    
T  5096880 ctatcatctggtcttggttgtcaccaacaaat 5096911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 5128412 - 5128289
Alignment:
Q  31 agtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtct 130  Q
    ||||||||||||| | ||||| |||||| ||||||||| ||| ||| |||| ||  |||||||||| ||| ||||||||||||| |||||||| | ||||    
T  5128412 agtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaaggattttcaagtgatgtgtttccatctatcatctggtct 5128313  T
Q  131 tggatgtcaccaacaaatggtctc 154  Q
    ||||||||||||||||||| ||||    
T  5128312 tggatgtcaccaacaaatgatctc 5128289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 5176817 - 5176940
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||||| ||||| ||||| |||||| |||||||||  || |||||||| || ||||||||||||||||||||| | ||||| || ||||    
T  5176817 ataacaagagtgcccttgtcaatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca 5176916  T
Q  123 tttcgtcttggatgtcaccaacaa 146  Q
    ||| ||||||||||||||||||||    
T  5176917 tttggtcttggatgtcaccaacaa 5176940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 5102617 - 5102492
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||||||||| | ||||| |||||| ||||||||| ||| ||| | ||||| ||||||||| | |||| |||||||||||| |||||||    
T  5102617 ataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaaggactttcacatgatgtgtttccatctatca 5102518  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    | | ||||||||||||||||||||||    
T  5102517 tctggtcttggatgtcaccaacaaat 5102492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 146
Target Start/End: Original strand, 5278644 - 5278767
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||||| || || ||||| |||||| |||||||||  || |||||||| || ||||||||||||||||||||| | ||||| || ||||    
T  5278644 ataacaagagtgcccttgtctatagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattctcacgtgatatatttccatcaatca 5278743  T
Q  123 tttcgtcttggatgtcaccaacaa 146  Q
    ||| ||||||||||||||||||||    
T  5278744 tttggtcttggatgtcaccaacaa 5278767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 5181930 - 5181805
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| || |||||| | ||||  || ||| |||||| || |||||| ||||||||||||||||||||||||| ||||||||||||  | ||||    
T  5181930 ataacaagagtgccgttttcagtagtaaagtccaaaagcattgcatatatttccttgtgtggatatgaaggattctcacatgatgtgtttccagcgatca 5181831  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    ||| ||||||||||||||| ||||||    
T  5181830 tttggtcttggatgtcaccgacaaat 5181805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 148
Target Start/End: Original strand, 5383404 - 5383529
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||| |||||||| |||| |||||| | |||| || |||||||||||| ||  |||||||||||||||||||||||||||| || ||||    
T  5383404 ataacaagagttcccctttcaattttaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatccatca 5383503  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    ||  ||||||||||||  ||||||||    
T  5383504 ttaagtcttggatgtcctcaacaaat 5383529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 5425996 - 5426113
Alignment:
Q  31 agtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtct 130  Q
    ||||||||||||| | ||||  ||| || |||||||||  || |||||||| || ||||||||||| |||||||||||||||||  | ||||||| ||||    
T  5425996 agtacccttttcagtggtaatgtcacaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtttccagcgatcatttggtct 5426095  T
Q  131 tggatgtcaccaacaaat 148  Q
    ||||||||||||||||||    
T  5426096 tggatgtcaccaacaaat 5426113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 5370658 - 5370774
Alignment:
Q  32 gtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtctt 131  Q
    |||||||||||| | ||| | |||||| |||||||||  ||||| ||||||||  ||| |||||| |||| |||||| ||||| |||||||||| |||||    
T  5370658 gtacccttttcagtagtacggtcaaaaagcattggatacatttcattgtgtggccatgtaggattttcacatgatgtttttccatctatcatttggtctt 5370757  T
Q  132 ggatgtcaccaacaaat 148  Q
    |||||||||||||||||    
T  5370758 ggatgtcaccaacaaat 5370774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 5434140 - 5434238
Alignment:
Q  50 agatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||| ||||||||| ||| |||||||| || ||||||||||||||||  ||| | ||||| | |||||||  ||||||||||||||||||||||    
T  5434140 agatcaaaaagcattggatatatctctttgtgcggttatgaaggattctcacacgatttatttccatttatcattcagtcttggatgtcaccaacaaat 5434238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 148
Target Start/End: Original strand, 5447702 - 5447790
Alignment:
Q  60 gcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||| |||||||||||| |||| |||||||| ||| | |||||||||||| ||||| |||  ||||||||||||||||| ||||    
T  5447702 gcattggatatatttctttgtgcggatttgaaggatcctcgcatgatgtgtttccatctattattcggtcttggatgtcaccaagaaat 5447790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 5350482 - 5350591
Alignment:
Q  33 tacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttg 132  Q
    ||||||||||| | ||||| |||||| |||||||||  || |||||||| || ||||||||||| ||||||||||||||      |||||||   |||||    
T  5350482 tacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatgaaggattttcacgtgatgtgtt------tatcattcattcttg 5350575  T
Q  133 gatgtcaccaacaaat 148  Q
    ||||||||||||||||    
T  5350576 gatgtcaccaacaaat 5350591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 5284392 - 5284267
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| ||||||||| | ||||| || ||| ||||||||| |||| ||||||| || ||||| ||| | ||| | ||||||||||| |  || |    
T  5284392 ataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatattgctttgtgcggttatgagggactttcaagcgatgtgtttccattaataa 5284293  T
Q  123 tttcgtcttggatgtcaccaacaaat 148  Q
    ||| ||| ||||||||| ||||||||    
T  5284292 ttttgtcatggatgtcagcaacaaat 5284267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 5179657 - 5179731
Alignment:
Q  61 cattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggat 135  Q
    |||||||| ||||||||| || || ||| |||||||||||||||||||  |||| | |||||||  |||||||||    
T  5179657 cattggatatatttctttctgcggctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5179731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 5281416 - 5281490
Alignment:
Q  61 cattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggat 135  Q
    |||||||| ||||||||| || || ||| |||||||||||||||||||  |||| | |||||||  |||||||||    
T  5281416 cattggatatatttctttctgcggctataaaggattctcacgtgatgtagttccatatatcattcggtcttggat 5281490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 9e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 8877695 - 8877812
Alignment:
Q  31 agtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtct 130  Q
    |||||| |||||| | ||||| |||||| ||||||||| |||||||||||| || ||||||||||| || |||||||||||||| |||||||||| ||||    
T  8877695 agtaccattttcattagtaaggtcaaaaagcattggatatatttctttgtgcggctatgaaggattttcgcgtgatgtgtttccatctatcatttggtct 8877794  T
Q  131 tggatgtcaccaacaaat 148  Q
    ||||||||||||||||||    
T  8877795 tggatgtcaccaacaaat 8877812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 20838702 - 20838831
Alignment:
Q  15 atactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcc 114  Q
    |||||||||| | | |||| |||| |||||| | |||||||||| ||||||||| ||| ||  | ||||||||||||||||| |||| |||||| |||||    
T  20838702 atactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattggatatatatcactatgtggatatgaaggattatcacatgatgtttttcc 20838801  T
Q  115 ttctatcatttcgtcttggatgtcaccaac 144  Q
    |||| |||||| ||||||||||||||||||    
T  20838802 ttctctcatttggtcttggatgtcaccaac 20838831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 20812347 - 20812476
Alignment:
Q  15 atactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcc 114  Q
    |||||||||| | | |||| |||| |||||| | |||||||||| |||||| || ||| ||  | |||||||| |||||||| ||||||||||| |||||    
T  20812347 atactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatcactatgtggatacgaaggattatcacgtgatgtttttcc 20812446  T
Q  115 ttctatcatttcgtcttggatgtcaccaac 144  Q
    |||| |||||| ||||||||||||||||||    
T  20812447 ttctctcatttggtcttggatgtcaccaac 20812476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 12599138 - 12599054
Alignment:
Q  60 gcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaac 144  Q
    ||||||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||    
T  12599138 gcattggatatatatccttgtgtggatatgaaggattatcacgtgatgtttttccttctctcaattggtcttggatgtcaccaac 12599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 30417953 - 30418021
Alignment:
Q  78 tgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    ||||||||| |||||||||  |||||||||| ||||||| | ||||   ||||||||||||||||||||    
T  30417953 tgtgtggatttgaaggatttgcacgtgatgtttttccttgtctcatacggtcttggatgtcaccaacaa 30418021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 8902 - 8778
Alignment:
Q  24 taacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcat 123  Q
    |||||| ||| ||||||||||| ||||| |||||| | |||| || |||||||||||| ||  |||||||||||||||||||||||||||| ||||||||    
T  8902 taacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatgaaggattctcacgtgatgtgtttccatctatcat 8803  T
Q  124 ttcgtcttggatgtcaccaacaaat 148  Q
    |  |||||||||||| |||||||||    
T  8802 taagtcttggatgtctccaacaaat 8778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 36213832 - 36213701
Alignment:
Q  23 ataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatca 122  Q
    ||||||| ||| || |||||| | |||||||| ||| |||| |  | ||| |||||||| || |||||||||||||||| |||||||||||| |||||||    
T  36213832 ataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggattctcacatgatgtgtttccatctatca 36213733  T
Q  123 tttcgtcttggatgtcaccaacaaatggtctc 154  Q
    ||| ||||||||||||||||||||||| ||||    
T  36213732 tttggtcttggatgtcaccaacaaatgttctc 36213701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 24 - 149
Target Start/End: Original strand, 18935465 - 18935590
Alignment:
Q  24 taacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcat 123  Q
    |||||| ||| |||||| || | |||||||||||| ||||||||||||||||  ||||||||| |||||||||  ||||| ||||||||||||| || ||    
T  18935465 taacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattat 18935564  T
Q  124 ttcgtcttggatgtcaccaacaaatg 149  Q
    |  |||||||||||| ||||||||||    
T  18935565 tcagtcttggatgtctccaacaaatg 18935590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 47 - 160
Target Start/End: Complemental strand, 34724565 - 34724452
Alignment:
Q  47 gtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    |||||||||||| ||||||||||||||||  | ||||||| |||||||||  ||||| ||||||| ||||| || |||  |||||||||||| |||||||    
T  34724565 gtaagatcaaaaagcattggatttatttcactttgtggatttgaaggatttgcacgtaatgtgttcccttcaattattcagtcttggatgtctccaacaa 34724466  T
Q  147 atggtctctcgccc 160  Q
    ||||| ||| ||||    
T  34724465 atggtatcttgccc 34724452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 6731 - 6856
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| ||||||||||| ||| |||| |||  |||||||| ||||||||| ||||||| ||||||||| ||||| |||||||||||||    
T  6731 actgctataacaaaagttcccttttcaatagtacgatctaaaaacattggatatatttctttatgtggatttgaaggattttcacgggatgtgtttcctt 6830  T
Q  117 ctatcatttcgtcttggatgtcacca 142  Q
    |  | |||   |||||||||||||||    
T  6831 cacttattcgctcttggatgtcacca 6856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 3262737 - 3262629
Alignment:
Q  35 cccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttgga 134  Q
    |||| |||||| |||||||||||| ||||||||| ||| ||  | ||||||||||| ||||| ||||||||||| ||||| |||||||||| ||||||||    
T  3262737 ccctattcaatagtaagatcaaaaagcattggatatatatccctatgtggatatga-ggattttcacgtgatgtttttccctctatcatttggtcttgga 3262639  T
Q  135 tgtcaccaac 144  Q
    ||||||||||    
T  3262638 tgtcaccaac 3262629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 144
Target Start/End: Original strand, 31175917 - 31176046
Alignment:
Q  15 atactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcc 114  Q
    |||||||||| | | |||| |||| |||||| | |||||||||| |||||| || ||| ||| | ||||||||||||||||| ||| |||| || |||||    
T  31175917 atactggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggattatcatgtgacgtttttcc 31176016  T
Q  115 ttctatcatttcgtcttggatgtcaccaac 144  Q
    |||| |||||| ||||||||||||||||||    
T  31176017 ttctctcatttggtcttggatgtcaccaac 31176046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 3407389 - 3407323
Alignment:
Q  80 tgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    ||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  3407389 tgtggatatcaaggattatcacgtgatgtttttccttctatcatttggtcttggatgtcaccaacaa 3407323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 3391632 - 3391536
Alignment:
Q  50 agatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    ||||||||| ||||||||| ||| ||| | ||||||||||||||||| |||| | |||| ||||||||| |||||  ||||||||||||||||||||    
T  3391632 agatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatgtcaccaacaa 3391536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 145
Target Start/End: Complemental strand, 3286631 - 3286516
Alignment:
Q  30 aagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtc 129  Q
    |||| |||||||||||||||||||||||| ||||  ||| ||| ||  | ||||||||||||||||| |||| |||||| ||||  ||| |||||  |||    
T  3286631 aagtgcccttttcaattgtaagatcaaaaagcatcagatatatatccctatgtggatatgaaggattatcacatgatgtttttcaatctctcattaggtc 3286532  T
Q  130 ttggatgtcaccaaca 145  Q
    ||||||||||||||||    
T  3286531 ttggatgtcaccaaca 3286516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 3314951 - 3315056
Alignment:
Q  38 ttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 137  Q
    ||||| ||||| | |||||||  |||||||| ||| ||  | |||| ||||||||| || ||||||||||| |||||||||||||||| |||||||||||    
T  3314951 ttttcgattgttaaatcaaaaaacattggatatatatccctatgtgaatatgaaggtttatcacgtgatgtttttccttctatcatttggtcttggatgt 3315050  T
Q  138 caccaa 143  Q
    ||||||    
T  3315051 caccaa 3315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 50 - 146
Target Start/End: Original strand, 3364274 - 3364370
Alignment:
Q  50 agatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    ||||||||| ||||||||| ||| ||| | ||||||||||||||||| |||| | |||| ||||||||| |||||  ||||||||| ||||||||||    
T  3364274 agatcaaaaagcattggatatatatctctatgtggatatgaaggattatcacatcatgtttttccttctctcattaggtcttggatatcaccaacaa 3364370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 3325098 - 3325003
Alignment:
Q  48 taagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaa 143  Q
    |||||| |||| ||||||||| ||| ||  | ||||||||||||||| | ||||  ||||| |||||||||||||||| |||||||||||||||||    
T  3325098 taagattaaaaagcattggatatatatccctctgtggatatgaaggactatcacacgatgtttttccttctatcatttggtcttggatgtcaccaa 3325003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 38 - 144
Target Start/End: Complemental strand, 3398628 - 3398522
Alignment:
Q  38 ttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgt 137  Q
    ||||| ||||| ||||||||| |||||| || ||| ||| | ||||||||| ||||||| ||   |||||| ||||||||| |||||| ||| |||||||    
T  3398628 ttttcgattgttagatcaaaaagcattgcatatatatctctatgtggatataaaggattatcgtctgatgtttttccttctctcatttggtcatggatgt 3398529  T
Q  138 caccaac 144  Q
    |||||||    
T  3398528 caccaac 3398522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 3267297 - 3267198
Alignment:
Q  47 gtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    |||||||  ||| |||| |||| ||| ||| | ||||||||||||||||| |||   ||||| |||| |||||| |||  ||||||||||||||||||||    
T  3267297 gtaagattgaaaagcatcggatatatatctctatgtggatatgaaggattatcagaagatgtttttcattctattattcagtcttggatgtcaccaacaa 3267198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 7164751 - 7164654
Alignment:
Q  47 gtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaac 144  Q
    |||||||||||| |||||||||   | ||  | ||| |||||||||| || ||  ||||||| ||||||||| | |||| ||||||||||||||||||    
T  7164751 gtaagatcaaaaagcattggatacttatccctatgtagatatgaagggttatcctgtgatgtttttccttctcttatttggtcttggatgtcaccaac 7164654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 47986812 - 47986750
Alignment:
Q  86 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  47986812 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 47986750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 47996099 - 47996037
Alignment:
Q  86 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  47996099 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 47996037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 48005386 - 48005324
Alignment:
Q  86 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  48005386 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 48005324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 48014671 - 48014609
Alignment:
Q  86 tatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaaat 148  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  48014671 tatgaaggattttcacgtgatgtgtttccatctatcatttggtcttggatgtcaccaacaaat 48014609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 6905918 - 6905806
Alignment:
Q  34 acccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttgg 133  Q
    ||||||||| ||||| ||||||||| ||||||  | ||| ||  | || |||||||||||||| ||||||||| | ||||||||| |||||| |||||||    
T  6905918 acccttttccattgttagatcaaaaagcattgtgtatatatccctatgcggatatgaaggattatcacgtgatatttttccttctctcatttggtcttgg 6905819  T
Q  134 atgtcaccaacaa 146  Q
    |||||||||||||    
T  6905818 atgtcaccaacaa 6905806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 32411194 - 32411083
Alignment:
Q  35 cccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttgga 134  Q
    |||| |||||| |||||||| ||| |||| | || ||| ||| | ||||||||||||||||| |||| ||| || ||||| ||| |||||| ||||| ||    
T  32411194 ccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggattatcacatgaagtatttccctctctcatttggtcttaga 32411095  T
Q  135 tgtcaccaacaa 146  Q
    ||||||||||||    
T  32411094 tgtcaccaacaa 32411083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 4835 - 4710
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| |||||||||||| || |||||||| ||||||| || |  |||||||| ||||||| | ||||| | ||||||||| ||||| ||||| |||||||    
T  4835 actgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggattttcacgagatgtatttcctt 4736  T
Q  117 ctatcatttcgtcttggatgtcacca 142  Q
     | || ||  ||||||||||||||||    
T  4735 ttctcgttcggtcttggatgtcacca 4710  T

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Target: scaffold0468 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 6209 - 6146
Alignment:
Q  83 ggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    |||||||||||||| ||||||||||| ||||||||  | |||| ||||||||||||||||||||    
T  6209 ggatatgaaggattatcacgtgatgtttttccttcccttatttggtcttggatgtcaccaacaa 6146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 22584169 - 22584094
Alignment:
Q  71 atttctttgtgtggatatgaaggattctcacgtgatgtgtttccttctatcatttcgtcttggatgtcaccaacaa 146  Q
    |||||||||||||| ||||||||| ||| | | |||||  |||| ||||| |||| ||||||||||||| ||||||    
T  22584169 atttctttgtgtggctatgaaggactcttaagcgatgtagttccatctatgatttggtcttggatgtcatcaacaa 22584094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 9762 - 9883
Alignment:
Q  17 actggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatgaaggattctcacgtgatgtgtttcctt 116  Q
    |||| ||||| |||||| || |||||||| ||||||   |||  |||||||| |||||||||  | || | ||||||||| ||||||||||| || ||||    
T  9762 actgctataaaaaaagttccattttcaatagtaagaatgaaaaacattggatatatttctttaagcggctttgaaggattttcacgtgatgtattccctt 9861  T
Q  117 ctatcatttcgtcttggatgtc 138  Q
    || |||||   |||||||||||    
T  9862 ctctcattcgctcttggatgtc 9883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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