View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_high_3 (Length: 503)
Name: NF2724_high_3
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 91 - 491
Target Start/End: Original strand, 52968761 - 52969162
Alignment:
| Q |
91 |
ttcgtttaattatctcctttgttcataatttcataatgactggtcgttgacatgacagacaggcttcaagaaggcaagaagggagttaaatagatgatat |
190 |
Q |
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| T |
52968761 |
ttcgtttaattatctcctttgttcataatttcataatgactggtcgttgacatgacagacaggcttcaagaaggcaagaagggagttaaatagatgatat |
52968860 |
T |
|
| Q |
191 |
cgaaaaattggtaaaaacaaactt-aagatgttttgctggtttttattacgagatgtacaatgtagcatcaaatggagatatatatttgtgttgtagttt |
289 |
Q |
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| T |
52968861 |
cgaaaaattggtaaaaacaaactttaagatgttttgctggtttgtattacgagatgtacaatgtagcatcaaatagagagatatatttgtgttgtagttt |
52968960 |
T |
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| Q |
290 |
agagcttattgtgtgatgttgttgccagtatggatataattttgtaaacattgtggtaatgctgcactttttgttctactctaatagattggcctgcagt |
389 |
Q |
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| T |
52968961 |
agagcttattgtgtgatgttgttgccagtatggatataattttgtaaacattgtggtaatgctgcactttttgttctactctaatagattggcctgcagt |
52969060 |
T |
|
| Q |
390 |
ttgtgatactcatggccatagattggttaatacttaacattaacgcatatattatgagaataaacatgtgctttagttgacaacttgtcacccactttat |
489 |
Q |
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| T |
52969061 |
ttgtgatactcatggccatagattggttaatacttagcattaacgcatatattatgagaataaacatgtgctttagttgtcaacttgtcacccactttat |
52969160 |
T |
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| Q |
490 |
tg |
491 |
Q |
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| T |
52969161 |
tg |
52969162 |
T |
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Back To:
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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 7334075 - 7334020
Alignment:
| Q |
217 |
gatgttttgctggtttt-tattacgagatgtacaatgtagcatcaaatggagatat |
271 |
Q |
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| T |
7334075 |
gatgttttgctggttttgtattaagagatgtacaatgtagcatcaaagggatatat |
7334020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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