View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2724_high_5 (Length: 436)
Name: NF2724_high_5
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 420
Target Start/End: Complemental strand, 23222254 - 23221848
Alignment:
| Q |
10 |
ataattcttcaaggctaaaacaatattttagatttttgaaagaaaaagttgtgcaaattatgttaaaacaatgtgcctagctagttgcgagttagaaacg |
109 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
23222254 |
ataattcaccaaggctaaaacaaaattttagatttttgaaagagaaagttgtgcaattcatgttaaaacaacgcacctag----tcgcgagttagaaaca |
23222159 |
T |
|
| Q |
110 |
ataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaataaaaatatggattgcctcacattcaacgct |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
23222158 |
ataaaagaaataaattatgagatggagtggctatgtaaaataaatgactgaaatttaaatgatttaaaataaaaatatgggttgcctcacattcaacgct |
23222059 |
T |
|
| Q |
210 |
tgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtcatgcaaataaattttacctctttcttct |
309 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23222058 |
tgtttagagcctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtcatgcaaataaattttacctctttcttct |
23221959 |
T |
|
| Q |
310 |
tctgaattcgctcctctttgtccggtttttaggtataccttcaatctttgaccattaaccttcaaagtgatgtttctttatgggtctgctaactccaatg |
409 |
Q |
| |
|
||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23221958 |
tctgaattcactcctttttgttcggtttctaggtataccttcaatctttgaccattaaccttcaaagtgatgtttctttatgggtctgctaactccaatg |
23221859 |
T |
|
| Q |
410 |
ctccattaggg |
420 |
Q |
| |
|
||||||||||| |
|
|
| T |
23221858 |
ctccattaggg |
23221848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 25131244 - 25131329
Alignment:
| Q |
185 |
tatggattgcctcacattcaacgcttgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttca |
270 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||| ||| ||||||||| ||||| ||||| ||||||| ||| |||||||| |||| |
|
|
| T |
25131244 |
tatgggttgtctcccattcaacgcttgtttagcatcttgagcttgacgcatttatctaaactgagcttgggagccccaaactttca |
25131329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 90 - 281
Target Start/End: Original strand, 16053783 - 16053974
Alignment:
| Q |
90 |
ctagttgcgagttagaaacgataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaataaaaatatgg |
189 |
Q |
| |
|
||||| || |||||| ||| |||||||||| ||||||||| |||||||||||||||||||||||| | | ||||||||||| | | ||||| |||||| |
|
|
| T |
16053783 |
ctagtcgcaagttagcaacaataaaagaaagaaattatgatatggaatggctatgtaaaataaattaatacaatttaaatgactggagataaacatatgg |
16053882 |
T |
|
| Q |
190 |
attgcctcacattcaacgcttgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtc |
281 |
Q |
| |
|
||| || |||||||||||||||||| |||||||| ||||| |||| | |||||||||||| ||||||| |||||||||| |||||||| |
|
|
| T |
16053883 |
gttgtcttccattcaacgcttgtttagcgtctcgagtttgacgcattcatataaggtgagcttgggaaccctaaaccttcagtatccttgtc |
16053974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 96 - 281
Target Start/End: Original strand, 1697409 - 1697594
Alignment:
| Q |
96 |
gcgagttagaaacgataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaataaaaatatggattgcc |
195 |
Q |
| |
|
||||||||| ||| ||||||||| ||||| ||||| || |||||||| |||| ||||| ||||||| || | || ||||||||||||||| ||||| |
|
|
| T |
1697409 |
gcgagttagcaacagtaaaagaaagaaattgtgagaaagagtggctatgcaaaagaaatggttgaaattaaattacttgaaaataaaaatatgggttgcc |
1697508 |
T |
|
| Q |
196 |
tcacattcaacgcttgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtc |
281 |
Q |
| |
|
|| |||||||| ||||||||||||||| |||||||| ||| |||||| | |||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
1697509 |
tcccattcaactcttgtttagagtctcaagcttgacgcatgtgtctatgttgagtttaggaatcccaaaccttcaagttccttgtc |
1697594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 278
Target Start/End: Original strand, 15577265 - 15577378
Alignment:
| Q |
165 |
taaatgattcaaaataaaaatatggattgcctcacattcaacgcttgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaa |
264 |
Q |
| |
|
||||||| | ||||| ||||||||| ||||||| |||||||||||||||||| |||||| |||||| |||||| |||||||||||| |||||||||| |
|
|
| T |
15577265 |
taaatgactgaaaattaaaatatgggttgcctcccattcaacgcttgtttagcatctcgaacttgacttatttgtgtaaggtgagcttgagaaccccaaa |
15577364 |
T |
|
| Q |
265 |
ccttcaggttcctt |
278 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15577365 |
ccttcaggttcctt |
15577378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 15577127 - 15577277
Alignment:
| Q |
10 |
ataattcttcaaggctaaaacaa-tattttag-atttttgaaagaaaaagttgtgcaaattatgttaaaacaatgtgcctagctagttgcgagttagaaa |
107 |
Q |
| |
|
|||||||| |||| ||||||||| | ||||| ||||||||||| ||||||| ||||| | |||| |||| ||||||||||| | ||||||||| || |
|
|
| T |
15577127 |
ataattctccaagtctaaaacaaattttttattatttttgaaaggaaaagttatgcaattcatgtaaaaataatgtgcctag----tcgcgagttagcaa |
15577222 |
T |
|
| Q |
108 |
cgataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaa |
162 |
Q |
| |
|
|||| ||||| | ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
15577223 |
taataagagaaacatattatgagatggagctgctatgaaaaataaatgactgaaa |
15577277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 18388132 - 18388069
Alignment:
| Q |
218 |
gtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcaggttccttgtc |
281 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||| |||||||| | ||| |||||||| |||| |
|
|
| T |
18388132 |
gtctcgagcttgacacatgtgtctaagttgagcttgggaacccctatcctccaggttccatgtc |
18388069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 189
Target Start/End: Complemental strand, 14426283 - 14426192
Alignment:
| Q |
98 |
gagttagaaacgataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaataaaaatatgg |
189 |
Q |
| |
|
||||||| ||| |||||| ||| |||||||||||| || |||||||||||||||||||||||||| |||||||| | ||||||||||||||| |
|
|
| T |
14426283 |
gagttagcaacaataaaataaagaaattatgagattgagtggctatgtaaaataaatgactgaaacttaaatgacttaaaataaaaatatgg |
14426192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 111 - 261
Target Start/End: Complemental strand, 9501263 - 9501116
Alignment:
| Q |
111 |
taaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaa-taaaaatatggattgcctcacattcaacgct |
209 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||| | ||| |||| |||||| | |||| ||||||||||| ||||||| ||||||||| | |
|
|
| T |
9501263 |
taaaagaaagaaattatgagatggagtggatatgtaaaattattga----aattgaaatgactgaaaaataaaaatatgggttgcctcccattcaacgtt |
9501168 |
T |
|
| Q |
210 |
tgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaacccc |
261 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||| ||||||| |||||||| |
|
|
| T |
9501167 |
tgtttaatatctcgagcttgacgcatgtgtctaagttgagcttgggaacccc |
9501116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 29709507 - 29709435
Alignment:
| Q |
200 |
attcaacgcttgtttagagtctcgagcttgacacatttgtctaaggtgagcttaggaaccccaaaccttcagg |
272 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||| | || ||| | ||||| ||||||| |
|
|
| T |
29709507 |
attcaacgtttgtttagcgtctcgagcttgacacatttgtctaaggtgtggttgggagctccaaaacttcagg |
29709435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 28279711 - 28279790
Alignment:
| Q |
90 |
ctagttgcgagttagaaacgataaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaat |
169 |
Q |
| |
|
||||| |||||||| ||| ||||||||| || |||| |||| || |||||||||||||||| ||| |||||||||||| |
|
|
| T |
28279711 |
ctagtcgcgagttaacaacagtaaaagaaagaacttataagattgagtggctatgtaaaataagtgaatgaaatttaaat |
28279790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 24840477 - 24840263
Alignment:
| Q |
12 |
aattcttcaaggctaaaacaatattttagatttttgaaagaaaaagttgtgcaaattatgttaaaacaatgtgcctagctagttgcgagttagaaacgat |
111 |
Q |
| |
|
|||||| |||||||||||||| | | ||||||||||||| |||||| ||||| |||||| ||||||| | ||||| | |||||||| ||| | |
|
|
| T |
24840477 |
aattctccaaggctaaaacaaaaacattgatttttgaaagagaaagttatgcaatttatgtaaaaacaacgcccctag----tcgcgagttaccaacagt |
24840382 |
T |
|
| Q |
112 |
aaaagaaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatgattcaaaat-aaaaatatggattgcctcacattcaacgctt |
210 |
Q |
| |
|
||| |||| |||||||||| | ||||||||||||||||||||||||||||||| |||| | | ||||| ||||| |||| || | || |||| | || || |
|
|
| T |
24840381 |
aaacgaaagaaattatgagctagaatggctatgtaaaataaatgactgaaattaaaattactgaaaatgaaaaaaatgggtttcttcccatttagcgatt |
24840282 |
T |
|
| Q |
211 |
gtttagagtctcgagcttg |
229 |
Q |
| |
|
|||||| |||| ||||||| |
|
|
| T |
24840281 |
gtttagcgtcttgagcttg |
24840263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 17026243 - 17026189
Alignment:
| Q |
117 |
aaataaattatgagatggaatggctatgtaaaataaatgactgaaatttaaatga |
171 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||| |||||| |
|
|
| T |
17026243 |
aaataaattatgagatggactggctatgtaaaataaatgacagaaattaaaatga |
17026189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 16604594 - 16604640
Alignment:
| Q |
191 |
ttgcctcacattcaacgcttgtttagagtctcgagcttgacacattt |
237 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
16604594 |
ttgcctcccattcaacacttgtttagtgtctcaagcttgacacattt |
16604640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 215
Target Start/End: Complemental strand, 24319175 - 24319135
Alignment:
| Q |
175 |
aaaataaaaatatggattgcctcacattcaacgcttgttta |
215 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
24319175 |
aaaataaaaatatgggttgcctcccattcaacgctttttta |
24319135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Complemental strand, 16166479 - 16166419
Alignment:
| Q |
185 |
tatggattgcctcacattcaacgcttgtttagagtctcgagcttgacacatttgtctaagg |
245 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||||| || || || |||||||||| |
|
|
| T |
16166479 |
tatgggttgcctcccattcaacgcttgtttagcgtctcgagtttaacgcaattgtctaagg |
16166419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University