View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2724_high_9 (Length: 328)
Name: NF2724_high_9
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 42954505 - 42954198
Alignment:
| Q |
9 |
gacatcatcacattgtctagtccacatccttcattgtagatcccatttttagtgttataagcaggggatttgatatcagggttctccttgaaatactgca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42954505 |
gacatcatcacattgtctagtccacatccttcattgtagatcccatttttagtgttataagcaggggatttgatatcagggttctccttgaaatactgca |
42954406 |
T |
|
| Q |
109 |
gcaagaacaagatttaggtaaattgattgaggattaaacaattgtctcattcattgtcataactttccaagatatttataattaccttgtggtgaacatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42954405 |
gcaagaacaagatttaggtaaattgattgaggattaaacaattgtctcattcattgtcataattttacaagatatttataattaccttgtggtgaacatt |
42954306 |
T |
|
| Q |
209 |
tgattcatcaaaggcacaacctaagggaaatgtgtctcctgtaaaaatgta-------attaatcattcaatacaaataactaattagaagcaggacaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42954305 |
tgattcatcaaaggcacaacctaagggaaatgtgtctcctgtaaaaatgtaattattaattaatcattcaatacaaataactaattagaagcaggacaaa |
42954206 |
T |
|
| Q |
302 |
aaacaaaa |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
42954205 |
aaacaaaa |
42954198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 32575251 - 32575335
Alignment:
| Q |
43 |
tgtagatcccatttttagtgttataagcaggggatttgatatcagggttctccttgaaatactgcagcaagaacaagatttaggt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||| | ||| |||||| ||||||||||| |||||| |||||||| |
|
|
| T |
32575251 |
tgtagatcccatttttagtgttataagcaggagatttgctatatgcgttgaccttgatatactgcagcaggaacaacatttaggt |
32575335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University