View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_1 (Length: 605)
Name: NF2724_low_1
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 18049606 - 18049019
Alignment:
| Q |
1 |
ataagttacataaatgcttctcctacaaaaagttacttacatgcttctttgtgatgatgaggcttaattttccataatggtacccttgccgttgctgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18049606 |
ataagttacataaatgcttctcctacaaaaagttacttacatgcttctttgtgatgatgaggcttaattttccataatggtacccttgccgttgctgcta |
18049507 |
T |
|
| Q |
101 |
ctttcattgacaatagaatcataaacagaaaagccaggtttaacataatactcttaaaagaagccatatatctcatattggagaaataaatcaagattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18049506 |
ctttcattgacaatagaatcataaacagaaaagccaggtttaacataatactcttaaaagaagccatatatctcatattggagaaataaatcaagattac |
18049407 |
T |
|
| Q |
201 |
tagaagacttatgaaagaacttgaactctataattagtcaataagaaagattattattgaaccttaaaaagtagttggcaccgtttcccttttccttttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18049406 |
cagaagacttatgaaagaacttgaactctataattagtcactaagaaagattattattgaaccttaaaaagtagttggcaccgtttcccttttccttttc |
18049307 |
T |
|
| Q |
301 |
caagacagccttttgcnnnnnnnagcttatagataagtctttgtttgcttaattgataagattcacatttgtcttttagtatgtaatgttgcttaaataa |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18049306 |
caagacagccttttgctttttttagcttatagataagtctttgtttgcttaattgataagattcacatttgtcttttagtatgtaatgttgcttaaataa |
18049207 |
T |
|
| Q |
401 |
aggcatgtactaggcatggtgtagtatcaannnnnnnnattgaaaatatagtgagtttatttatggggacaaagcgccaacgaacgaaaaatgattgttg |
500 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18049206 |
aggcatgtactaggcattgtgtagtatcaattttttttattgaaaatatagtgagtttatttatggggacaaagcgccaaggaacgaaaaatgattgttg |
18049107 |
T |
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| Q |
501 |
gtaattttgtaggaatattaacccttgttgtaataataaaaagggaattaaaatataaatctaaatcacaagaatattcatgtttttg |
588 |
Q |
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| T |
18049106 |
gtaattttgtaggaatattaacccttgttgtaataataaaaagggaattaaaatataaatctaaagcattagaatattcatgtttttg |
18049019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 4395720 - 4396307
Alignment:
| Q |
1 |
ataagttacataaatgcttctcctacaaaaagttacttacatgcttctttgtgatgatgaggcttaattttccataatggtacccttgccgttgctgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4395720 |
ataagttacataaatgcttctcctacaaaaagttacttacatgcttctttgtgatgatgaggcttaattttccataatggtacccttgccgttgctgcta |
4395819 |
T |
|
| Q |
101 |
ctttcattgacaatagaatcataaacagaaaagccaggtttaacataatactcttaaaagaagccatatatctcatattggagaaataaatcaagattac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4395820 |
ctttcattgacaatagaatcataaacagaaaagccaggtttaacataatactcttaaaagaagccatatatctcatattggagaaataaatcaagattac |
4395919 |
T |
|
| Q |
201 |
tagaagacttatgaaagaacttgaactctataattagtcaataagaaagattattattgaaccttaaaaagtagttggcaccgtttcccttttccttttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4395920 |
cagaagacttatgaaagaacttgaactctataattagtcactaagaaagattattattgaaccttaaaaagtagttggcaccgtttcccttttccttttc |
4396019 |
T |
|
| Q |
301 |
caagacagccttttgcnnnnnnnagcttatagataagtctttgtttgcttaattgataagattcacatttgtcttttagtatgtaatgttgcttaaataa |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4396020 |
caagacagccttttgctttttttagcttatagataagtctttgtttgcttaattgataagattcacatttgtcttttagtatgtaatgttgcttaaataa |
4396119 |
T |
|
| Q |
401 |
aggcatgtactaggcatggtgtagtatcaannnnnnnnattgaaaatatagtgagtttatttatggggacaaagcgccaacgaacgaaaaatgattgttg |
500 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4396120 |
aggcatgtactaggcattgtgtagtatcaattttttttattgaaaatatagtgagtttatttatggggacaaagcgccaaggaacgaaaaatgattgttg |
4396219 |
T |
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| Q |
501 |
gtaattttgtaggaatattaacccttgttgtaataataaaaagggaattaaaatataaatctaaatcacaagaatattcatgtttttg |
588 |
Q |
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| T |
4396220 |
gtaattttgtaggaatattaacccttgttgtaataataaaaagggaattaaaatataaatctaaagcattagaatattcatgtttttg |
4396307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 4474657 - 4474737
Alignment:
| Q |
30 |
aagttacttacatgcttctttgtgatgatgaggcttaattttccataatggtacccttgccgttgctgctactttcattgacaa |
113 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| |
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| T |
4474657 |
aagttacttacatgcttct---tcttgatgaggctcaattttccacgatggtacccttgctgttgctgcgactttcattgacaa |
4474737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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