View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2724_low_10 (Length: 371)

Name: NF2724_low_10
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2724_low_10
NF2724_low_10
[»] chr7 (2 HSPs)
chr7 (170-355)||(5974962-5975145)
chr7 (11-113)||(5975202-5975305)
[»] chr3 (4 HSPs)
chr3 (179-358)||(26538251-26538430)
chr3 (11-113)||(26538508-26538609)
chr3 (179-232)||(741821-741874)
chr3 (179-232)||(752257-752310)
[»] chr8 (1 HSPs)
chr8 (11-43)||(7274269-7274301)
[»] chr4 (1 HSPs)
chr4 (11-44)||(20946270-20946303)
[»] chr2 (1 HSPs)
chr2 (11-44)||(5695986-5696019)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 170 - 355
Target Start/End: Complemental strand, 5975145 - 5974962
Alignment:
Q  170 tacgacactagtgccttctgctgcaacaaatgcatctaactaagcatttgttagttcgtaaatatcaagttctgtatgtttcagtctgctaggttctcaa 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  5975145 tacgacactagtgccttctgctgcaacaaatgcatctaactaagcatttgttagtttctaaatatcaggttctgtatgtttcagtctgctaggttctcaa 5975046  T
Q  270 acttctcagcaaacaacaatttatttcctaacggtccttgccatttaattgtgactttctatgtttgaatgcaaactcattttcat 355  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   ||| |||||||||||||| |||||||    
T  5975045 acttctcagcaaacaacaatttatttcctaacagtccttgccatttaattgtgactt--catgcttgaatgcaaactcgttttcat 5974962  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 5975305 - 5975202
Alignment:
Q  11 atcatcatcaaatgagttgtcaatatgtggttgcnnnnnnn-ttatgagaatgttcgtctcgatgaagacacatacataataacgagattttcagaagaa 109  Q
    |||||||||||||||||||| |||||||||||||        ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5975305 atcatcatcaaatgagttgttaatatgtggttgcaaaaaaaattatgaggatgttcgtctcgatgaagacacgtacataataacgagattttcagaagaa 5975206  T
Q  110 gaat 113  Q
    ||||    
T  5975205 gaat 5975202  T

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Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 179 - 358
Target Start/End: Complemental strand, 26538430 - 26538251
Alignment:
Q  179 agtgccttctgctgcaacaaatgcatctaactaagcatttgttagttcgtaaatatcaagttctgtatgtttcagtctgctaggttctcaaacttctcag 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||| ||||| |||||||||||||||||  ||    
T  26538430 agtgccttctgctgcaacaaatgcatctaactaagcatttgttagttcctaaatctcaggttttgtatgtttgagtctactaggttctcaaacttccgag 26538331  T
Q  279 caaacaacaatttatttcctaacggtccttgccatttaattgtgactttctatgtttgaatgcaaactcattttcatcat 358  Q
    |||| ||||||||||||||  |  |||||| ||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  26538330 caaagaacaatttatttccagagagtccttaccatttaattgtgactttccatgcttgaatgcaaactcatattcatcat 26538251  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 26538609 - 26538508
Alignment:
Q  11 atcatcatcaaatgagttgtcaatatgtggttgcnnnnnnnttatgagaatgttcgtctcgatgaagacacatacataataacgagattttcagaagaag 110  Q
    ||||||||||||||| ||||||||||||||||||       ||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  26538609 atcatcatcaaatgatttgtcaatatgtggttgcaaaaaa-ttatgaggatgttcatctcgaggaagacacatacataataatgagattttcagaagaag 26538511  T
Q  111 aat 113  Q
    |||    
T  26538510 aat 26538508  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 741821 - 741874
Alignment:
Q  179 agtgccttctgctgcaacaaatgcatctaactaagcatttgttagttcgtaaat 232  Q
    |||| ||||||||||||||||||||| |||||  ||||||||| |||| |||||    
T  741821 agtgtcttctgctgcaacaaatgcatgtaacttggcatttgtttgttcctaaat 741874  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 752257 - 752310
Alignment:
Q  179 agtgccttctgctgcaacaaatgcatctaactaagcatttgttagttcgtaaat 232  Q
    |||| ||||||||||||||||||||| |||||  ||||||||| |||| |||||    
T  752257 agtgtcttctgctgcaacaaatgcatgtaacttggcatttgtttgttcctaaat 752310  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 7274301 - 7274269
Alignment:
Q  11 atcatcatcaaatgagttgtcaatatgtggttg 43  Q
    |||||||||||||||||||||||||||||||||    
T  7274301 atcatcatcaaatgagttgtcaatatgtggttg 7274269  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Original strand, 20946270 - 20946303
Alignment:
Q  11 atcatcatcaaatgagttgtcaatatgtggttgc 44  Q
    ||||||||||||||||||| ||||||||||||||    
T  20946270 atcatcatcaaatgagttgccaatatgtggttgc 20946303  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 44
Target Start/End: Complemental strand, 5696019 - 5695986
Alignment:
Q  11 atcatcatcaaatgagttgtcaatatgtggttgc 44  Q
    ||||||||||||||||||| ||||||||||||||    
T  5696019 atcatcatcaaatgagttgccaatatgtggttgc 5695986  T

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