View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_13 (Length: 317)
Name: NF2724_low_13
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 64 - 295
Target Start/End: Complemental strand, 28472181 - 28471950
Alignment:
| Q |
64 |
aaaaacacatctcaaaaacatataagttcacagtctcgtagctaccacaaccttccacgcaaagctgagcattattttgaagcacatcccgcctaattaa |
163 |
Q |
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| T |
28472181 |
aaaatcacatctcaaaaacatataagttcacattctcgtagctaccacaaccttccacgcaaagctgagcattattttgaagcacatcccgcctaattaa |
28472082 |
T |
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| Q |
164 |
attatttgttgttggaatacgattctgaaatagtcgcctaacaaagtggtttgctttcaaagaaaccaccttaggtattgacatgtggttatggcctata |
263 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
28472081 |
attatttgttgttggaatacgattatgaaatagtcgcctaacaaagtggtttgctttcaaagaaactaccttaggtagtgacatgtggttatggcctata |
28471982 |
T |
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| Q |
264 |
caagaatttttcatgccggtgtagaagacatg |
295 |
Q |
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| T |
28471981 |
caagaatttttcaggccggtgtagaagacatg |
28471950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 115 - 232
Target Start/End: Complemental strand, 28463254 - 28463137
Alignment:
| Q |
115 |
cttccacgcaaagctgagcattattttgaagcacatcccgcctaattaaattatttgttgttggaatacgattctgaaatagtcgcctaacaaagtggtt |
214 |
Q |
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|||||||| | ||||| |||||||||||||||||| ||| ||| |||||||||| || |||||||| ||||| ||||| | |||||| |||||| |||| |
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| T |
28463254 |
cttccacggagagctgggcattattttgaagcacaccccacctgattaaattatccgtcgttggaatgcgattttgaaacactcgcctcacaaagaggtt |
28463155 |
T |
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| Q |
215 |
tgctttcaaagaaaccac |
232 |
Q |
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| T |
28463154 |
tactttcaaagaaaccac |
28463137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 28472279 - 28472232
Alignment:
| Q |
19 |
gaaaatgtccaaattggagaaaatgctttggagggcgctctggctaaa |
66 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
28472279 |
gaaaatgtccaaattggagaaaatgatctggagggcgctctggctaaa |
28472232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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