View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_15 (Length: 299)
Name: NF2724_low_15
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 41812676 - 41812949
Alignment:
| Q |
18 |
atttttcctgtatcatgagcagagttagttctgttcttctcttgaaatttggataagtgagctagtataattcaatttttccagtatcatagtgacaagt |
117 |
Q |
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| T |
41812676 |
atttttccagtatcgtgagcagagttagttctgttcttctcttgaaatttggataagtgagctagtataattcgatttttccagtatcatagtgacaagt |
41812775 |
T |
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| Q |
118 |
ggggtctttatgttttgctcagtatagaaattttttgttccatgtaacttattaagcagactggcattatggtcttaaacaaatattccctccatatcgc |
217 |
Q |
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| T |
41812776 |
ggggtctttatgttttgctcagtatagaaattttttgttccatgtaacttattaagcagactggcattatggtcttaaacaaatattccctccatatcgc |
41812875 |
T |
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| Q |
218 |
tataacttacaagcgtctcatttgagttgtgtacagttcgtaagaaaataattagttgtattgattttgatgat |
291 |
Q |
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| T |
41812876 |
tataacttataagcgtctcatttgagttgtgtacagttcgtaagaaaacaattagttgtattgattttgatgat |
41812949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 41799476 - 41799511
Alignment:
| Q |
28 |
tatcatgagcagagttagttctgttcttctcttgaa |
63 |
Q |
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| T |
41799476 |
tatcatgagcagagttagtcctgttcttctcttgaa |
41799511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 41805799 - 41805843
Alignment:
| Q |
19 |
tttttcctgtatcatgagcagagttagttctgttcttctcttgaa |
63 |
Q |
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| T |
41805799 |
ttttccctgtatcagtagcaaagttagttctgttcttctcttgaa |
41805843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 978841 - 978889
Alignment:
| Q |
236 |
catttgagttgtgtacagttcgtaagaaaataattagttgtattgattt |
284 |
Q |
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| T |
978841 |
catttgagttgtttacaattcttaagaaaatgattagttgtgttgattt |
978889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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