View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_19 (Length: 257)
Name: NF2724_low_19
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_19 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: scaffold0425 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 11778 - 11556
Alignment:
| Q |
17 |
tgttccaaacaccatggaaactcccattcaccacaccatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattcccttaaacaa |
116 |
Q |
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||||||||||||||||||| ||||||| ||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
11778 |
tgttccaaacaccatggaagctcccatccacca-----tgaggacagtggttttttctcaagttggatgtcattgaatccaccaaaattcccttaaacaa |
11684 |
T |
|
| Q |
117 |
caaagtagcatgtcattcaatattttcgcacttaacaattaaaaatataaataaaacgaaaatcacggtaaaaggccacatgacatcctcagcatgtaat |
216 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11683 |
caaagtggcatgtcattcaattttttatcacttaacaattaaaaatattaataaaatgaaaatcacggtaaaaggccacatgacatcctcaccatgtaat |
11584 |
T |
|
| Q |
217 |
tggttgatgcaagtaattcatcggcttc |
244 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
11583 |
tggttgatgcaattaattcatcggcttc |
11556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 6527071 - 6526849
Alignment:
| Q |
17 |
tgttccaaacaccatggaaactcccattcaccacaccatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattcccttaaacaa |
116 |
Q |
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||||||||||||||||||| ||| ||| ||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
6527071 |
tgttccaaacaccatggaagctctcatccacca-----tgaggacagtggttttttctcaagttggatgtcattgaatccaccaaaattcccttaaacaa |
6526977 |
T |
|
| Q |
117 |
caaagtagcatgtcattcaatattttcgcacttaacaattaaaaatataaataaaacgaaaatcacggtaaaaggccacatgacatcctcagcatgtaat |
216 |
Q |
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|||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6526976 |
caaagtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgacatcctcaccatgtaat |
6526877 |
T |
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| Q |
217 |
tggttgatgcaagtaattcatcggcttc |
244 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
6526876 |
tggttgatgcaattaattcatcggcttc |
6526849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 6848652 - 6848429
Alignment:
| Q |
17 |
tgttccaaacaccatggaaactcccattcaccacaccatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattcccttaaacaa |
116 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| || |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
6848652 |
tgttccaaacaccatggaagatcccatccacca-----tgaggacagtggttttttctcaagttggatgtcattgaatccaccaaaattcccttaaacaa |
6848558 |
T |
|
| Q |
117 |
caaagtagcatgtcattcaatattttcg-cacttaacaattaaaaatataaataaaacgaaaatcacggtaaaaggccacatgacatcctcagcatgtaa |
215 |
Q |
| |
|
|||||| |||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
6848557 |
caaagtggcatgtcattcaatttttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatggcatcctcaccatgtaa |
6848458 |
T |
|
| Q |
216 |
ttggttgatgcaagtaattcatcggcttc |
244 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
6848457 |
ttggttgatgcaattaattcatcggcttc |
6848429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 6558234 - 6558093
Alignment:
| Q |
102 |
aattcccttaaacaacaaagtagcatgtcattcaatattttcgcacttaacaattaaaaatataaataaaacgaaaatcacggtaaaaggccacatgaca |
201 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6558234 |
aattccctttgacaacaaggtggcatgtcattcaattttttatcacttaacaattaaaaatataaataaaatgaaaatcacggtaaaaggccacatgaca |
6558135 |
T |
|
| Q |
202 |
tcctcagcatgtaattggttgatgcaagtaattcatcggctt |
243 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
6558134 |
tcctcaccatgtaatttgttgatgcaagtaattcatcggctt |
6558093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 228
Target Start/End: Original strand, 6939140 - 6939363
Alignment:
| Q |
9 |
gtagactgtgttccaaacaccatggaaactcccattcaccacaccatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattccc |
108 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| |||||| | |||||| |||||||||||||||||||||||||||||| | ||||||||| |
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| T |
6939140 |
gtagactgtgatccaaacaccatggaagctcccacccaccac-----gaggacagaggttttttctcgagttggatgccattgaattcgacaaaattcca |
6939234 |
T |
|
| Q |
109 |
ttaaacaacaaagt---agcatgtcattcaatattttcgca------cttaacaattaaaaatataaataaaacgaaaatcacggtaaaaggccacatga |
199 |
Q |
| |
|
|| | |||||||| ||||||||||||||| ||| || ||||||| ||||||| | |||||||| ||||| |||||||||||||||| |
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| T |
6939235 |
tttgaaaacaaagtggcagcatgtcattcaatttttgatcacttcttcttaacacttaaaaaaagaaataaaatgaaaactggagtaaaaggccacatga |
6939334 |
T |
|
| Q |
200 |
catcctcagcatgtaattggttgatgcaa |
228 |
Q |
| |
|
|||||||| | |||||||| ||||||||| |
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|
| T |
6939335 |
catcctcaccgtgtaattgattgatgcaa |
6939363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 6789060 - 6788912
Alignment:
| Q |
93 |
atccaccaaaattcccttaaacaacaaagtagcatgtcattcaatattttcgcactt------aacaattaaaaatataaataaaacgaaaatcacggta |
186 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| |||||||||||| | |||||||||||||||| | | | |
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|
| T |
6789060 |
atccaccaaaattccctttaacaacaaagtggcatgtcattcaattttttatgacttcttcttaacaattaaaaagagaaataaaacgaaaatcgcag-a |
6788962 |
T |
|
| Q |
187 |
aaaggccacatgacatcctcagcatgtaattggttgatgcaagtaattca |
236 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
6788961 |
aaaggctacatgacgtcctcactatgtaattgtttgattcaagtaattca |
6788912 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 6943547 - 6943607
Alignment:
| Q |
50 |
caccatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattccctt |
110 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6943547 |
caccatgaggacagaggttttttctcgagttggatgccattgaatgcaccaaaattccctt |
6943607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 6940351 - 6940410
Alignment:
| Q |
51 |
accatggggacagtggttttttctcgagttggatgccattgaatccaccaaaattccctt |
110 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6940351 |
accatgaggacagaggttttttctcgagttggatgccattgaatgcaccaaaattccctt |
6940410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6558286 - 6558238
Alignment:
| Q |
1 |
tttatcacgtagactgtgttccaaacaccatggaaactcccattcacca |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6558286 |
tttatcacgtagactgtgttccaaacaccatggaagctcccattcacca |
6558238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 7745835 - 7745897
Alignment:
| Q |
60 |
acagtggttttttctcgagttggatgccattgaatccaccaaaattcccttaaacaacaaagt |
122 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
7745835 |
acagtgattttttctcaagttagatgccattgaattcaccaaaattccctttgacaacaaagt |
7745897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 6549633 - 6549581
Alignment:
| Q |
186 |
aaaaggccacatgacatcctcagcatgtaattggttgatgcaagtaattcatc |
238 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||||||| ||||| ||||||| |
|
|
| T |
6549633 |
aaaaggtcacatgacattctcaccatgtaattggttgatacaagtcattcatc |
6549581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 6549673 - 6549633
Alignment:
| Q |
9 |
gtagactgtgttccaaacaccatggaaactcccattcacca |
49 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
6549673 |
gtagactgtgatccaaacaccatggaagctcccatccacca |
6549633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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