View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_20 (Length: 254)
Name: NF2724_low_20
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 15 - 254
Target Start/End: Complemental strand, 3699225 - 3698986
Alignment:
| Q |
15 |
tatgtaaataaacagcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaataacacaaagttcttaatcttatgagtt |
114 |
Q |
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| T |
3699225 |
tatgtaaataaacagcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaatcttatgagtt |
3699126 |
T |
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| Q |
115 |
taaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaa |
214 |
Q |
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| T |
3699125 |
taaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaa |
3699026 |
T |
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| Q |
215 |
ccatttcatcatcaacaatatcaaccataagttcaggatc |
254 |
Q |
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| T |
3699025 |
ccatttcatcatcaacaatatcaaccataagttcaggatc |
3698986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 3702909 - 3702674
Alignment:
| Q |
19 |
taaataaacagcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaataacacaaagttcttaatcttatgagtttaaa |
118 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3702909 |
taaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaa |
3702810 |
T |
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| Q |
119 |
gaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccat |
218 |
Q |
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| T |
3702809 |
gaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccat |
3702710 |
T |
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| Q |
219 |
ttcatcatcaacaatatcaaccataagttcaggatc |
254 |
Q |
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| T |
3702709 |
ttcatcatcaacaatatcaaccataagttcaggatc |
3702674 |
T |
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