View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_29 (Length: 238)
Name: NF2724_low_29
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3698998 - 3698775
Alignment:
| Q |
1 |
taagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698998 |
taagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagt |
3698899 |
T |
|
| Q |
101 |
ccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttctcattgaaaccatgttgtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698898 |
ccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttctcattgaaaccatgttgtgtc |
3698799 |
T |
|
| Q |
201 |
caagtaagattttgttgagtataa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3698798 |
caagtaagattttgttgagtataa |
3698775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3702686 - 3702463
Alignment:
| Q |
1 |
taagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||| |
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| T |
3702686 |
taagttcaggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcacaaagttcaacaggcaaatcttgaagcttcacttcagt |
3702587 |
T |
|
| Q |
101 |
ccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttctcattgaaaccatgttgtgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3702586 |
ccttttctgcaaacaagaccacctacctttcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttttcattgaaaccatgttgtgtc |
3702487 |
T |
|
| Q |
201 |
caagtaagattttgttgagtataa |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3702486 |
caagtaagattttgttgagtataa |
3702463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 17602894 - 17602710
Alignment:
| Q |
30 |
atctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtccttttctgcaaacaagaccacctacctt |
129 |
Q |
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||||||||||| ||||| | ||||||||||||||||| |||||||| |||||||| | ||| | |||||||||||||| |||||| ||||||||||| |
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| T |
17602894 |
atctcacaaatattatgaagcacacaacaagcaccaagaacaacaggtaaatcttgcaacttaatttcagtccttttcttcaaacacccccacctacctt |
17602795 |
T |
|
| Q |
130 |
tcaatctagcaaatgcatctttagcaactttttgtatctcaccaatcttctcattgaaaccatgttgtgtccaagtaagattttg |
214 |
Q |
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|||| ||| ||| ||||||||| ||| ||| | || |||||||| ||||||| || |||||||||||||| || |||||||| |
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| T |
17602794 |
tcaacctactaaaagcatctttaccaattttctcaatttcaccaattctctcattaaatccatgttgtgtccacgtcagattttg |
17602710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 7 - 132
Target Start/End: Original strand, 52250744 - 52250869
Alignment:
| Q |
7 |
caggatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtcctttt |
106 |
Q |
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|||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||| ||| ||||||| || | | |||||| || |||| || |
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| T |
52250744 |
caggatccatcttctcattcctcatttcacaaatattatgcaaaacacaacaagcaccaagaacaccaggcaactcctcaatcttcacctctatcctctt |
52250843 |
T |
|
| Q |
107 |
ctgcaaacaagaccacctacctttca |
132 |
Q |
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| T |
52250844 |
ctgcaaacaagaccaccttcctttca |
52250869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 52262389 - 52262535
Alignment:
| Q |
10 |
gatccattttctcacctttcatctcacaaatgttatgcaaaacacaacaagcaccaagtacaacaggcaaatcttgtagcttcacttcagtccttttctg |
109 |
Q |
| |
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||||||| |||||| | ||||||||||||| ||||||||||||||||||||||| | | ||||||||| | | ||||| || ||||| || || |
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| T |
52262389 |
gatccatcttctcatttctcatctcacaaatattatgcaaaacacaacaagcacctaaaatcttaggcaaatcctcaattttcacctctgtcctcttttg |
52262488 |
T |
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| Q |
110 |
caaacaagaccacctacctttcaatctagcaaatgcatctttagcaa |
156 |
Q |
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|||||| |||||||| ||||||| || ||||||||||||||||||| |
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| T |
52262489 |
caaacaggaccacctccctttcagccttgcaaatgcatctttagcaa |
52262535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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