View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2724_low_30 (Length: 233)

Name: NF2724_low_30
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2724_low_30
NF2724_low_30
[»] chr7 (6 HSPs)
chr7 (14-221)||(34762681-34762890)
chr7 (14-205)||(34763957-34764148)
chr7 (151-208)||(31403828-31403885)
chr7 (162-204)||(3897935-3897977)
chr7 (154-221)||(43970061-43970130)
chr7 (151-204)||(3884085-3884138)
[»] scaffold0010 (2 HSPs)
scaffold0010 (23-205)||(236666-236848)
scaffold0010 (14-56)||(236850-236892)
[»] chr1 (7 HSPs)
chr1 (14-221)||(8771248-8771457)
chr1 (14-221)||(49508420-49508629)
chr1 (14-208)||(45432675-45432869)
chr1 (151-208)||(43427476-43427533)
chr1 (157-200)||(17813599-17813642)
chr1 (152-196)||(12458806-12458850)
chr1 (152-208)||(20129652-20129708)
[»] chr8 (2 HSPs)
chr8 (14-221)||(13533340-13533548)
chr8 (14-221)||(13622880-13623088)
[»] chr2 (5 HSPs)
chr2 (14-221)||(43114903-43115111)
chr2 (155-208)||(8071045-8071098)
chr2 (149-200)||(648530-648581)
chr2 (154-205)||(17247419-17247470)
chr2 (152-221)||(36756949-36757020)
[»] scaffold0839 (1 HSPs)
scaffold0839 (35-221)||(4628-4816)
[»] chr3 (5 HSPs)
chr3 (14-188)||(11596054-11596228)
chr3 (28-126)||(36035945-36036045)
chr3 (161-219)||(19671234-19671293)
chr3 (152-208)||(20537715-20537771)
chr3 (153-200)||(2618684-2618731)
[»] chr6 (4 HSPs)
chr6 (150-200)||(11338410-11338460)
chr6 (151-200)||(25357656-25357705)
chr6 (155-208)||(21952482-21952535)
chr6 (152-196)||(16863258-16863302)
[»] chr5 (3 HSPs)
chr5 (151-200)||(24010405-24010454)
chr5 (152-200)||(10813161-10813209)
chr5 (152-221)||(13020913-13020984)
[»] chr4 (4 HSPs)
chr4 (152-192)||(53213160-53213200)
chr4 (151-200)||(55267132-55267181)
chr4 (152-196)||(53985892-53985936)
chr4 (152-221)||(54421402-54421473)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 34762890 - 34762681
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34762890 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaacccccacaatgaacttggtgacattattttttattgtaaacaact 34762791  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  34762790 tttgtctttgcacgctaacttttctgtgcgttttgtaaggagacaagcaaataaggtagctcataacatagctagagcttccttatcccaccctagcccc 34762691  T
Q  212 catattttct 221  Q
    ||||||||||    
T  34762690 catattttct 34762681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 34763957 - 34764148
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34763957 ttatcttcgaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaacccccacaatgaacttggtgacattattttttattgtaaacaact 34764056  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacc 205  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34764057 tttgtctttgcacgctaacttttctgtgcgttttgtaaggagtcaagcaaataaggtagctcataacatagctagagcttccttatcccacc 34764148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 31403828 - 31403885
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||    
T  31403828 aggagacaaacaaatagggtagctcataacatagctagagctttcttatctcacccta 31403885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 3897977 - 3897935
Alignment:
Q  162 aaataaggtagctcataacatagctagagcttccttatcccac 204  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  3897977 aaataaggtagctcataacatagctagagctttcttattccac 3897935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 43970061 - 43970130
Alignment:
Q  154 aggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccccatattttct 221  Q
    ||||||||||||||||| |||||||  || |||||||| ||||||||| | ||||  |||||||||||||    
T  43970061 aggcaagcaaataaggttgctcatagtattgctagagcgtccttatccaatcctagcccccatattttct 43970130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 3884138 - 3884085
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccac 204  Q
    ||||| |||||||||| | |||||| || |||||||||||| ||||||||||||    
T  3884138 aggagacaagcaaataggatagctcgtagcatagctagagcctccttatcccac 3884085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 236848 - 236666
Alignment:
Q  23 aatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaacttttgtcttt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236848 aatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaacccccacaatgaacttggtgacattattttttattgtaaacaacttttgtcttt 236749  T
Q  123 gcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacc 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  236748 gcacgctaacttttctgtgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacc 236666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 236892 - 236850
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaa 56  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  236892 ttatcttcgaatctgattgcaaaattgtggtggatgttgtgaa 236850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 8771457 - 8771248
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  8771457 ttatcttcgaatctgattgcaaaattgtggtggatgttgtgaactctagtgtcaacccccacaatgaacttggtgagattattttttattgtaaacaact 8771358  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccc 211  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  |||    
T  8771357 tttgtctttccacgctaacttttctatgcgttttgtaaggaggtaagcaaataaggtagctcataacatagctagagtttccttatcccaccctagcccc 8771258  T
Q  212 catattttct 221  Q
    ||||||||||    
T  8771257 catattttct 8771248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 49508420 - 49508629
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  49508420 ttatcttcgaatctgattgcaaaattgtggtggatgttgtgaactctagtgtcaacccccacaacgaacttggtgacattattttttattgtaaacaact 49508519  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccc 211  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  49508520 tttgtctttgcacgctaacttttatgtgcgttttgtaaggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccc 49508619  T
Q  212 catattttct 221  Q
    ||||||||||    
T  49508620 catattttct 49508629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 45432675 - 45432869
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45432675 ttatcttcgaatctgattgcaaaattgtggtggatgctgtgaactatagtgtcaacccccacaatgaacttggtgacattattttttattgtaaacaact 45432774  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    |||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45432775 tttgtctttgtacactaacttttctgtgcgttttgtaaggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccacccta 45432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 208
Target Start/End: Original strand, 43427476 - 43427533
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    ||||||||| |||||| ||||||| ||||||||||||||| | ||||||| |||||||    
T  43427476 aggaggcaaacaaatagggtagcttataacatagctagagttaccttatctcacccta 43427533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 17813599 - 17813642
Alignment:
Q  157 caagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  17813599 caagcaaatagggtagcttataacataactagagcttccttatc 17813642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 12458850 - 12458806
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttcct 196  Q
    ||||||||||||||| ||| ||||| |||||||||||||| ||||    
T  12458850 ggaggcaagcaaatagggtcgctcacaacatagctagagcatcct 12458806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 20129652 - 20129708
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    |||||||||| |||||||| ||||||||||| || | ||| |||||||| |||||||    
T  20129652 ggaggcaagctaataaggttgctcataacattgcaatagcatccttatcacacccta 20129708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 13533340 - 13533548
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13533340 ttatcttcgaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaaccctcacaatgaacttggtgacattattttttattgtaaacaact 13533439  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta-cccc 212  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  13533440 tttgtctttgcacgccaacttttctgtgcgttttgttaggaggcaagcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcccc 13533539  T
Q  213 atattttct 221  Q
    |||||||||    
T  13533540 atattttct 13533548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 13622880 - 13623088
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  13622880 ttatcttcgaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaaccctcacaatgaacttggtgacattattttttattgtaaacaact 13622979  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta-cccc 212  Q
    ||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  13622980 tttgtctttgcacgccaacttttctgtgcgttttgttaggaggcaagcaaataaggtaactcataacatagctaaagcttccttatcccaccctagcccc 13623079  T
Q  213 atattttct 221  Q
    |||||||||    
T  13623080 atattttct 13623088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 43114903 - 43115111
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  43114903 ttatcttcgaatctgattgcaaaattgtggtggatgctgtgaactttagtgtcaacccccacaatgaacttggtgacatt-ttttttattgtaaacaatt 43115001  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccc 211  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  43115002 tttgtctttgcacgctaacttttctgtgcgttttgtaaggaggcaaacaaataaggtagctcataacatagctagagcttccttatcccaccctagcccc 43115101  T
Q  212 catattttct 221  Q
    ||||||||||    
T  43115102 catattttct 43115111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 8071098 - 8071045
Alignment:
Q  155 ggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    |||||||||||||||| ||||||   ||||| ||||||||||||||||||||||    
T  8071098 ggcaagcaaataaggttgctcattcaatagcaagagcttccttatcccacccta 8071045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 648530 - 648581
Alignment:
Q  149 taaggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||| |||||    
T  648530 taaggaggcaagcaaatagagtggctcatagcatagctagagcttctttatc 648581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 205
Target Start/End: Original strand, 17247419 - 17247470
Alignment:
Q  154 aggcaagcaaataaggtagctcataacatagctagagcttccttatcccacc 205  Q
    |||||| |||||||||||| ||||||||||| || |||||||||||| ||||    
T  17247419 aggcaaacaaataaggtagttcataacatagttaaagcttccttatctcacc 17247470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 36757020 - 36756949
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccccatattttct 221  Q
    |||||||||| ||||| || |||||||  || ||||||||||||||||| || ||||  |||||||||||||    
T  36757020 ggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatcctagcccccatattttct 36756949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0839 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 4816 - 4628
Alignment:
Q  35 aaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaacttttgtctttgcacgctaactt 134  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||    
T  4816 aaattgtgttggatgctgtgaactctagtgtcaacccccacaatgaacttggtgacattattttttactgtaaacaactttagtccttgtacgctaactt 4717  T
Q  135 ttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccccatattttct 221  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  4716 ttctgtgcgttttgtaaggagacaagcaaataagttagctcataacatagctagagcttccttatcccaccctaacccccatattttct 4628  T

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Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 14 - 188
Target Start/End: Complemental strand, 11596228 - 11596054
Alignment:
Q  14 ttatcttcaaatctgattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatgaacttggtgacattattttttattgtaaacaact 113  Q
    |||||||  |||| ||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  11596228 ttatctttgaatcggattgcaaaattgtgatggatggtgtaaactctagtgtcaacccccacaatgaacttggtgacattatttcttattgtaaacaact 11596129  T
Q  114 tttgtctttgcacgctaacttttctatgcgttttgtaaggaggcaagcaaataaggtagctcataacatagctag 188  Q
    ||||||||||||| |||||| || | |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11596128 tttgtctttgcacactaactattatgtgcgttttgtaaggaggcaaacaaataaggtagctcataacatagctag 11596054  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 36036045 - 36035945
Alignment:
Q  28 gattgcaaaattgtggtggatgctgtgaactctagtgtcaatccccacaatga-acttggtgacatta-ttttttattgtaaacaacttttgtctttgca 125  Q
    |||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| | ||||| |||||| |||||||||||||||||||||||||||||||    
T  36036045 gattccaaaattgtggtggatgttgtgaactctagtgtcattcctcacaatgataattggtaacattatttttttattgtaaacaacttttgtctttgca 36035946  T
Q  126 c 126  Q
    |    
T  36035945 c 36035945  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 19671234 - 19671293
Alignment:
Q  161 caaataaggtagctcataacatagctagagcttccttatcccacccta-ccccatatttt 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  19671234 caaataaggtagcttataacatagctagagcttccttatcccaccctagccccatatttt 19671293  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 20537715 - 20537771
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    |||||||||||||||||||||||||||| |||||||||| | ||||||| |||||||    
T  20537715 ggaggcaagcaaataaggtagctcataagatagctagagttgccttatcacacccta 20537771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 2618731 - 2618684
Alignment:
Q  153 gaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2618731 gaggcaagcaaatagggtagctcaaaatatagctagagcttccttatc 2618684  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 200
Target Start/End: Complemental strand, 11338460 - 11338410
Alignment:
Q  150 aaggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  11338460 aaggagacaagcaaataaggtagctcattacatcgctagagcttccttatc 11338410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 25357656 - 25357705
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  25357656 aggaggcaagcaaataaggtagctcataacttagctagagttttcttatc 25357705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 21952482 - 21952535
Alignment:
Q  155 ggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta 208  Q
    |||||||||||||||| ||||||   ||||| ||||||||||||||||| ||||    
T  21952482 ggcaagcaaataaggttgctcattcaatagcaagagcttccttatcccatccta 21952535  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 16863258 - 16863302
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttcct 196  Q
    ||||||||||||||| ||| ||||| |||||||||||||| ||||    
T  16863258 ggaggcaagcaaatagggtcgctcacaacatagctagagcatcct 16863302  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 24010454 - 24010405
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  24010454 aggaggcaagcaaacagggtagctcataacatagctagaacttccttatc 24010405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 10813209 - 10813161
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||| |||| ||| |||||||  ||||||||||||||||||||    
T  10813209 ggaggcaagctaatagggttgctcatagtatagctagagcttccttatc 10813161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 13020984 - 13020913
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccccatattttct 221  Q
    ||||||||||||||||||| ||| |||  || |||||||| ||||||||| | ||||  |||||||||||||    
T  13020984 ggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaacccccatattttct 13020913  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 53213200 - 53213160
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagct 192  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  53213200 ggaggtaagcaaataaggtagctcataacatagttagagct 53213160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 55267132 - 55267181
Alignment:
Q  151 aggaggcaagcaaataaggtagctcataacatagctagagcttccttatc 200  Q
    |||||||||  ||||| ||||||||||||||| ||||||| |||||||||    
T  55267132 aggaggcaaaaaaatagggtagctcataacattgctagagtttccttatc 55267181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 53985936 - 53985892
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttcct 196  Q
    ||||||||||||||| ||| ||||| |||||||||||||| ||||    
T  53985936 ggaggcaagcaaatagggtcgctcacaacatagctagagcatcct 53985892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 54421473 - 54421402
Alignment:
Q  152 ggaggcaagcaaataaggtagctcataacatagctagagcttccttatcccacccta--ccccatattttct 221  Q
    |||||||||| |||||||| | |||||  || ||||||||||||||||| || ||||  |||||||||||||    
T  54421473 ggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatcctagcccccatattttct 54421402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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