View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_6 (Length: 436)
Name: NF2724_low_6
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Original strand, 1891381 - 1891783
Alignment:
| Q |
23 |
gaaaagtgaattgtctcttataataagacacagatgtagtagtaatttagtctctggatgaaatagtgattgtttac---------ctcctaatcaaact |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
1891381 |
gaaaagtgaattgtctcttataataagaaacagatgtagtagtaattttgtctccggatgaaatagtgattgtttacaaaatttacctcctaatcaaact |
1891480 |
T |
|
| Q |
114 |
ccgtattaccaaggtctatttcttcacggttagttagttttggtgaaattggtctcttta----atattatgcttatgatggtttgtgttcatattatgc |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1891481 |
ccgtattaccaaggtctatttctccacggttagttagttttggtgaaattggtctctttatttaatattatgcttatgatggtttgtgttcatattatgc |
1891580 |
T |
|
| Q |
210 |
agatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactttcattc |
309 |
Q |
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| T |
1891581 |
agatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactttcattc |
1891680 |
T |
|
| Q |
310 |
tagctgtcattttcaggtttgataattagtatatttgagtttttcagattcttatcattttaaacaaagttatttaattttgagtgaagattcattttaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
1891681 |
tagctgtcattttcaggtttgataattagtatatttgagtttttcagattcttatcattttaaacgaagttatttaattttgagtgaagactcattttaa |
1891780 |
T |
|
| Q |
410 |
tct |
412 |
Q |
| |
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||| |
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| T |
1891781 |
tct |
1891783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 204 - 363
Target Start/End: Original strand, 1906285 - 1906444
Alignment:
| Q |
204 |
ttatgcagatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactt |
303 |
Q |
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|||||||| |||||| |||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1906285 |
ttatgcaggtgttcatctcagattcttgggtatatgagtattaactacagttctccaacacttgcttcagcaattgctaatctggtacctgctttcactt |
1906384 |
T |
|
| Q |
304 |
tcattctagctgtcattttcaggtttgataattagtatatttgagtttttcagattctta |
363 |
Q |
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|||| |||||||| | ||||||||||| ||| |||||||||||| ||| |||||||||| |
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| T |
1906385 |
tcatgctagctgttactttcaggtttgctaactagtatatttgaatttggcagattctta |
1906444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 204 - 344
Target Start/End: Original strand, 1896613 - 1896753
Alignment:
| Q |
204 |
ttatgcagatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactt |
303 |
Q |
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||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| |
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| T |
1896613 |
ttatgcagatgttcatctcaggttctggggtatattggtattaattacagttctccaacacttgcttcagcacttgctaatctaatacctgctttcactt |
1896712 |
T |
|
| Q |
304 |
tcattctagctgtcattttcaggtttgataattagtatatt |
344 |
Q |
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|||| |||||||||| |||||||||| || |||||||||| |
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| T |
1896713 |
tcatgctagctgtcacattcaggtttgctagttagtatatt |
1896753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 1912110 - 1912236
Alignment:
| Q |
204 |
ttatgcagatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactt |
303 |
Q |
| |
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||||| ||||||||| |||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1912110 |
ttatgtagatgttcatctcagattctggggtatattagtattaattcaagttctccaacacttgcttcagcaattgccaatctggtacctgctttcactt |
1912209 |
T |
|
| Q |
304 |
tcattctagctgtcattttcaggtttg |
330 |
Q |
| |
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|||| |||||||| | ||||||||||| |
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| T |
1912210 |
tcatgctagctgttactttcaggtttg |
1912236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 1884534 - 1884635
Alignment:
| Q |
229 |
tggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactttcattctagctgtcattttcaggtt |
328 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| |
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| T |
1884534 |
tggggtatattgctattaattacagttctccaacactttctgcagcaattggtaatcttgtacctgctttcactttcatgttagctgttattttcaggtt |
1884633 |
T |
|
| Q |
329 |
tg |
330 |
Q |
| |
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|| |
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| T |
1884634 |
tg |
1884635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 177 - 330
Target Start/End: Original strand, 1878531 - 1878685
Alignment:
| Q |
177 |
ttatgcttatgatggtttgtgtt-catattatgcagatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagca |
275 |
Q |
| |
|
||||| || |||||||||||||| ||| |||| ||||| |||| ||| ||| ||||||| | || ||||| |||||||||||||||||| || || || |
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| T |
1878531 |
ttatggttctgatggtttgtgtttcatgttatacagatcttcatgtcaaattatggggtacactgctattagttacagttctccaacactttctgcatca |
1878630 |
T |
|
| Q |
276 |
attggtaatctggtacctgctttcactttcattctagctgtcattttcaggtttg |
330 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
1878631 |
attggtaatctcatacctgctttcactttcatcttagctgtcactttcaggtttg |
1878685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 329
Target Start/End: Original strand, 1917185 - 1917304
Alignment:
| Q |
210 |
agatgttcagctcagattttggggtatattggtattaactacagttctccaacacttgcttcagcaattggtaatctggtacctgctttcactttcattc |
309 |
Q |
| |
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|||||||| ||||||||||||||||| ||| || | ||||||||||| |||||| | || |||||||| || || | |||||||| || ||||| |
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| T |
1917185 |
agatgttcttctcagattttggggtatgctggcatcagttacagttctcctacactttcctctgcaattggaaacctcattcctgcttttaccttcatgt |
1917284 |
T |
|
| Q |
310 |
tagctgtcattttcaggttt |
329 |
Q |
| |
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|||||||||||| ||||||| |
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|
| T |
1917285 |
tagctgtcatttgcaggttt |
1917304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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