View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2724_low_7 (Length: 406)
Name: NF2724_low_7
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 53479025 - 53479302
Alignment:
| Q |
1 |
cagtgttagattaggtggttacatacatatcctaatctagataagcgattgaaattcccttcagattcaattaggtggctttctatatttgttgctgttg |
100 |
Q |
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| T |
53479025 |
cagtgttagattaggtggttacatacatatcctaatctagataagcgattgaaattcccttcacattcaattaggtggctttctatatttgttgctgttg |
53479124 |
T |
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| Q |
101 |
tatgtatgactaaaagaaaaagtgtgtgagaaattaaaggtaaaggagactgagaaatgacatgcgagctctccattattctactctaattctaatgaat |
200 |
Q |
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| T |
53479125 |
tatgtatgactaaaagaaaaagtgtgtgagaaattaaaggtaaaggagactgagaaatgacatgcgagctctccattattctactctaattctaatgaat |
53479224 |
T |
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| Q |
201 |
g---acttgatgaacctattctaaatttaattgcaattca-ttttctcccaaaaaattcgttctgtgttttggttatg |
274 |
Q |
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| T |
53479225 |
gaaaacttgatgaacctattctaaatttaattgcaattcatttttctcccaaaaaattcgttctgtgttttcgttatg |
53479302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 299 - 388
Target Start/End: Original strand, 53479362 - 53479451
Alignment:
| Q |
299 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtg |
388 |
Q |
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| T |
53479362 |
ttaaaattctaaggcgaaaataataagaatgttttttcccctcaaaaacaatgtttttgtttgtagtcaattaaaaagttgtgattggtg |
53479451 |
T |
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