View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2724_low_9 (Length: 391)
Name: NF2724_low_9
Description: NF2724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2724_low_9 |
 | |
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| [»] chr8 (4 HSPs) |
| |
|
| [»] chr4 (4 HSPs) |
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| [»] chr1 (3 HSPs) |
| |
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| [»] chr3 (4 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0655 (1 HSPs) |
| | |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48187765 - 48187536
Alignment:
| Q |
1 |
ccatataggtactctagttaaagaaattgagtagtcaatagcataataattatagttatatttaatactcgtgtttactatattatattttgataacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48187765 |
ccatataggtactctagttaaagatattgagtagtcaataacatagtaattatagttatatttaatactcgtgtttactatattatattttgacaacaaa |
48187666 |
T |
|
| Q |
101 |
gtaattaaccaggcaggagttagttaccttaaaccaaaccaaagcccttagtacggatcaggagtacctcaagtatgaaactaagttattaagtatttaa |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48187665 |
gtaattaaccaggcaagagttagttaccttaaaccaaaccaaagcccttagtacggatcaggagtacctcaagtatgaaactaagttattaagtatttaa |
48187566 |
T |
|
| Q |
201 |
ctgtgaatgtataaagatagtggaacaaag |
230 |
Q |
| |
|
|||||| ||||| || |||| |||||||| |
|
|
| T |
48187565 |
ttgtgaaggtatagaggtagtagaacaaag |
48187536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 48187501 - 48187380
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48187501 |
aaaggtaagggcatcactccacgcgcttccatacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta |
48187402 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
48187401 |
tgtgctatatattggtgatgtg |
48187380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 21268348 - 21268226
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |
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|
| T |
21268348 |
caaaggtaagggcatcacttcacgcgcttccgtacgtgtatgtgtgtatatatttgtgttgtgatgattattatagtgttgttgttttgaaatgagtgct |
21268249 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
21268248 |
atgtgctatatattggtgatgtg |
21268226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 16421583 - 16421703
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16421583 |
caaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
16421680 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
16421681 |
atgtgttatatattggtgatgtg |
16421703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 36017877 - 36018000
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-c |
367 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||| ||||||||| || |||||||||||| |||||| |
|
|
| T |
36017877 |
caaaggtaagggcatcactccacgtgcttccgtacgtgtatatgtgtatataattgtgttgtgataattatcatattggtgttgttttgaaatgaatgat |
36017976 |
T |
|
| Q |
368 |
tatgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||||| |||||||||||| |||| |
|
|
| T |
36017977 |
tatgtgttatatattggtgttgtg |
36018000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 11283522 - 11283401
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||| || |||||||| ||| |||||| || |
|
|
| T |
11283522 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtgtataattgtgttgtgataattatcataatgatgttgtttagaaatgaatgatta |
11283423 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
11283422 |
tgtgttatatattggtgttgtg |
11283401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 12528858 - 12528761
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||| ||| ||||| || |||||||||||| |||||| |
|
|
| T |
12528858 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgttatgataattgtcataatggtgttgttttgaaatgaatg |
12528761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 16483973 - 16484042
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatc |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
16483973 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatatatttgtgttgtgataattatc |
16484042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 28384009 - 28384125
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
|||||||| | |||||||||||| ||| |||||||||||| |||||| |||||| |||| ||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
28384009 |
aaggtaagagtatcactccacgcatttcggtacgtgtatgt----atatatctgtgttttgataattatcataatgttgttgttttgaaatgaatgttat |
28384104 |
T |
|
| Q |
371 |
gtgctatatattggtgatgtg |
391 |
Q |
| |
|
||| |||||||| ||| |||| |
|
|
| T |
28384105 |
gtgttatatattcgtggtgtg |
28384125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 28392884 - 28393000
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
|||| ||| ||||||||||||||| ||| || |||||||| |||||||||| || |||| ||||| ||| ||||||||||||||| |||||| ||| |
|
|
| T |
28392884 |
aaggcaagagcatcactccacgcgtttcggtgtgtgtatgt----atatatttgttttttgataattattataatgttgttgttttgaaatgaatgttat |
28392979 |
T |
|
| Q |
371 |
gtgctatatattggtgatgtg |
391 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
28392980 |
gtgttatatattggtggtgtg |
28393000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 44668815 - 44668935
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta |
369 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
44668815 |
aaaggtaagggcatcactctacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttg-tttgaagtgaatgtta |
44668913 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44668914 |
tgtgctatatattggtgatgtg |
44668935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 5537228 - 5537105
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-c |
367 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| || |||||||||||| |||||| |
|
|
| T |
5537228 |
caaaggtaacagcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtagtgataattatcataatggtgttgttttgaaatgaatgat |
5537129 |
T |
|
| Q |
368 |
tatgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||||| |||||| ||||| |||| |
|
|
| T |
5537128 |
tatgtgttatatagtggtgttgtg |
5537105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 356
Target Start/End: Original strand, 6818492 - 6818578
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgtttt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | || |||||||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
6818492 |
aaaggtaagggcatcactccacgcgcttatgtacgtgtatatttgtatatatttgtattgtgataattatcatagtggtgttgtttt |
6818578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 3897438 - 3897314
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg- |
366 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||| ||| |||||| |||||||||||| ||||| | ||| |||||||||||| |||||| |
|
|
| T |
3897438 |
aaaggtaagggtatcactccacgtgtttccgtacgtgtatatgtatatatataattgtgttgtgataattattttggtggtgttgttttgaaatgaatga |
3897339 |
T |
|
| Q |
367 |
ctatgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||||| || ||||| ||| |||| |
|
|
| T |
3897338 |
ctatgtgttacatatttgtgttgtg |
3897314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 15418853 - 15418973
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15418853 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
15418952 |
T |
|
| Q |
371 |
gtgctatatattggtgatgtg |
391 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
15418953 |
gttttatatattggtgatgtg |
15418973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 15425870 - 15425990
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15425870 |
aaggtaagggcatcactccacacgcttccgtacgtatatgtgtgaatatatttgtgttgtgatgattatcatagtattgttgttttgaagtgaatgctat |
15425969 |
T |
|
| Q |
371 |
gtgctatatattggtgatgtg |
391 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
15425970 |
gttctatatattggtgatgtg |
15425990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 270 - 391
Target Start/End: Complemental strand, 28654572 - 28654450
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-ct |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||| ||||| || ||||||||| ||||||||| || ||||||||||| |||||| | |
|
|
| T |
28654572 |
aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtgtatataattctgttgtgataattatcataatggggttgttttgaaatgaatgatt |
28654473 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||| |||||||||||| |||| |
|
|
| T |
28654472 |
atgtgttatatattggtgttgtg |
28654450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 52944725 - 52944768
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtg |
314 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
52944725 |
aaggtaagggcatcactccacacgcttccgtacatgtatatgtg |
52944768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 18901896 - 18902018
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
18901896 |
caaaggtaagggtatcattccacgcgcttccgtacgtgtatttgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatgat |
18901995 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18901996 |
atgtgctatatattggtgatgtg |
18902018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 18153328 - 18153449
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| || |||||||||||| |||||| || |
|
|
| T |
18153328 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatatgtgtatataattgtgtggtgataattatcataatggtgttgttttgaaatgaatgatta |
18153427 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
18153428 |
tgtgttatatattggtgttgtg |
18153449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 51783595 - 51783494
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||| | |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
51783595 |
caaaggtaaaggcatcactccacgtgcttctgtacgtatatgtgtgaatatatttatgttataatgattattatagtgttgttgttttgaagtaaatgct |
51783496 |
T |
|
| Q |
369 |
at |
370 |
Q |
| |
|
|| |
|
|
| T |
51783495 |
at |
51783494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 270 - 391
Target Start/End: Original strand, 19932666 - 19932787
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgcta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19932666 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatttatgaatatatttgtgtcgtgatgattattatagtgttgttgttttgaagtgaatgcta |
19932765 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||||||||||||| ||||||| |
|
|
| T |
19932766 |
tgtgctatatattgctgatgtg |
19932787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 1311405 - 1311527
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
|||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
1311405 |
caaatgtaagagtatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattattatagtgttgttgttttgaagtgaatact |
1311504 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
1311505 |
atgtgttatatattggtgatgtg |
1311527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 391
Target Start/End: Complemental strand, 11035057 - 11034936
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatg-cta |
369 |
Q |
| |
|
||||||||||||||||| |||||| |||||||| ||||| |||| ||||| |||||||||||| ||||||||| || |||||||||||| |||||| || |
|
|
| T |
11035057 |
aaggtaagggcatcacttcacgcgtttccgtacatgtatatgtgtatataattgtgttgtgataattatcataatgatgttgttttgaaatgaatgatta |
11034958 |
T |
|
| Q |
370 |
tgtgctatatattggtgatgtg |
391 |
Q |
| |
|
|||| |||||||||||| |||| |
|
|
| T |
11034957 |
tgtgttatatattggtgttgtg |
11034936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 271 - 381
Target Start/End: Original strand, 3224669 - 3224778
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| |||| |||| || ||||| |||||| |||||| ||| |
|
|
| T |
3224669 |
aaggtaagggcatcactccacgcgtttccgtacatgtatatgattatatatttgtgttgtgataattagcatattgctgttg-tttgaaatgaatgttat |
3224767 |
T |
|
| Q |
371 |
gtgctatatat |
381 |
Q |
| |
|
||||||||||| |
|
|
| T |
3224768 |
gtgctatatat |
3224778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 271 - 391
Target Start/End: Original strand, 24540576 - 24540696
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctat |
370 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24540576 |
aaggtaagggtatcactccacacgcttccgtacgtttatgtgtgaatatatttgtgttgtgatgattatcatattgttgttgttttgaagtgaatgctat |
24540675 |
T |
|
| Q |
371 |
gtgctatatattggtgatgtg |
391 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
24540676 |
gttttatatattggtgatgtg |
24540696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 3509768 - 3509888
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
3509768 |
caaaggtaagggcatcattccatgcgcttccgtatgtgtatgtgtgaatat--ttgtgttgtgatggttaccatagtgttgttgttttgaagtgaatgct |
3509865 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3509866 |
atgtgctatatattggtgatgtg |
3509888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 15277846 - 15277930
Alignment:
| Q |
302 |
acgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgctatgtgctatatattggtg |
386 |
Q |
| |
|
||||||||||||| ||||||||||||| |||| |||| |||| | ||||||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
15277846 |
acgtgtatgtgtgtatatatttgtgttttgataattaacataatattgttgtttggaaatgaatgctatgtgttatatattggtg |
15277930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 269 - 391
Target Start/End: Original strand, 10295 - 10415
Alignment:
| Q |
269 |
caaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
368 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10295 |
caaaggtaagggcatcactccacgcacgtccgtacgtgtatgtgtgactat--ttgtgttgtgatgattatcatagtgttgttgttttgaagtgaatgct |
10392 |
T |
|
| Q |
369 |
atgtgctatatattggtgatgtg |
391 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
10393 |
atgtgttatatattggtgatgtg |
10415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 7491 - 7573
Alignment:
| Q |
271 |
aaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaata--tatttgtgttgtgatgattatcatagtgttgtt |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
7491 |
aaggtaagggcatcactccacgcgcttccgtacatgtatgtttatatatctatttgtgttgtgataattatcatggtgttgtt |
7573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 32870353 - 32870275
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattatcatagtgtt |
348 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||| ||| |||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
32870353 |
aaaggtaagggtttcgctccacgtgcttccgtacgtatatatgtgtatatatttatgttgtgatgattatcatagtgtt |
32870275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 34785 - 34716
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattat |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
34785 |
aaaggtaagggcatcactccacgcgtttccgtacgtgtatatgtatatataactgtgttgtgataattat |
34716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 2038937 - 2039006
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtgaatatatttgtgttgtgatgattat |
339 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
2038937 |
aaaggtaaggacatcactccacgtgcttccgtacatgtatatgtatatataactgtgttgtgataattat |
2039006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 29963229 - 29963185
Alignment:
| Q |
270 |
aaaggtaagggcatcactccacgcgcttccgtacgtgtatgtgtg |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
29963229 |
aaaggtaaggatatcactccacgcgcttccgtacgtgtgtgtgtg |
29963185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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