View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_15 (Length: 319)
Name: NF2725_high_15
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 166 - 299
Target Start/End: Complemental strand, 11471277 - 11471145
Alignment:
| Q |
166 |
tataccatttgacgtaagagagaaaaattatctcttataattataagacgaaattgatgaacaaactaaaacaaatcatgttagctttgatggacaaaac |
265 |
Q |
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| T |
11471277 |
tataccatttgacttaa-agagaaaaattatctcttataataataagacgaaattgatgaacaaactaaaacaaatcatgttagttttgatggacaaaac |
11471179 |
T |
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| Q |
266 |
tgagaagagataaatattcatgtttgtgctaact |
299 |
Q |
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| T |
11471178 |
tgagaagagataaatattcatgtttgtgctaact |
11471145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 11471358 - 11471248
Alignment:
| Q |
53 |
atcaacaattggaatgttatttttcactcaaaatcaaacttcattttgaaggatgttaataatggtgttatagtgcaccgaactatataccatttgacgt |
152 |
Q |
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| T |
11471358 |
atcaacaattggaatgttatttttcac-caaaatcaaacttcgttttgaaggatg---ataatggtgttatagtgcaccgaactatataccatttgac-t |
11471264 |
T |
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| Q |
153 |
aaaagagaaaaattat |
168 |
Q |
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| T |
11471263 |
taaagagaaaaattat |
11471248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 11477978 - 11477937
Alignment:
| Q |
66 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
107 |
Q |
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| T |
11477978 |
atgttatttttcactcaaaatcaaacttcattttgaaggatg |
11477937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 11484600 - 11484552
Alignment:
| Q |
59 |
aattggaatgttatttttcactcaaaatcaaacttcattttgaaggatg |
107 |
Q |
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| T |
11484600 |
aattcgaatgtcatttttcacgaaaaatcaaacttcattttgaaggatg |
11484552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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