View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_high_16 (Length: 314)

Name: NF2725_high_16
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_high_16
NF2725_high_16
[»] chr3 (1 HSPs)
chr3 (34-314)||(42753966-42754246)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 34 - 314
Target Start/End: Original strand, 42753966 - 42754246
Alignment:
Q  34 ggcactaagcaaaagaggaaatagaatattcacataccccactaaaattgccttctcagcttttaataaatcaaagaaatgcaaggtagcaagcactgaa 133  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42753966 ggcactaagcaaaacaggaaatagaatattcacataccccactaaaattgccttctcagcttttaataaatcaaagaaatgcaaggtagcaagcactgaa 42754065  T
Q  134 aatgccatggagtatgcatttagaggttttgtgtctccatttccagaagttaagtttaccctcgatgtcaatccaaatgctggcctatcaaaagctaaaa 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42754066 aatgccatggagtatgcatttagaggttttgtgtctccatttccagaagttaagtttaccctcgatgtcaatccaaacgctggcctatcaaaagctaaaa 42754165  T
Q  234 cttttgaacacgtagcctcagccaatggcttcataacttgtttccaagagaaaactgaggctccgaatccatgtaacagaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42754166 cttttgaacacgtagcctcagccaatggcttcataacttgtttccaagagaaaactgaggctccgaatccatgtaacagaa 42754246  T

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