View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_high_19 (Length: 265)

Name: NF2725_high_19
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_high_19
NF2725_high_19
[»] chr5 (7 HSPs)
chr5 (1-252)||(39349801-39350052)
chr5 (63-152)||(25001908-25001996)
chr5 (123-188)||(1011184-1011249)
chr5 (51-135)||(30915759-30915840)
chr5 (162-226)||(25002194-25002257)
chr5 (51-98)||(33362372-33362420)
chr5 (104-132)||(30673650-30673678)
[»] chr1 (12 HSPs)
chr1 (1-227)||(40187844-40188069)
chr1 (1-227)||(50483828-50484053)
chr1 (166-252)||(40188068-40188154)
chr1 (104-209)||(40722141-40722246)
chr1 (52-226)||(51694165-51694336)
chr1 (166-233)||(50484052-50484119)
chr1 (138-201)||(40722712-40722775)
chr1 (51-135)||(49619578-49619659)
chr1 (51-151)||(16217727-16217823)
chr1 (55-126)||(51693412-51693483)
chr1 (56-93)||(52439077-52439114)
chr1 (1-37)||(40722052-40722088)
[»] chr3 (5 HSPs)
chr3 (1-227)||(54353265-54353489)
chr3 (166-252)||(54353488-54353574)
chr3 (51-135)||(36627192-36627272)
chr3 (56-93)||(14206575-14206612)
chr3 (56-93)||(14214323-14214360)
[»] chr4 (12 HSPs)
chr4 (68-227)||(48500863-48501022)
chr4 (166-233)||(48500797-48500864)
chr4 (121-215)||(23757622-23757715)
chr4 (144-226)||(17522247-17522329)
chr4 (145-216)||(5433072-5433143)
chr4 (53-135)||(5547177-5547256)
chr4 (172-224)||(5236573-5236625)
chr4 (51-98)||(37642325-37642373)
chr4 (51-151)||(55953101-55953198)
chr4 (105-151)||(1273151-1273197)
chr4 (54-98)||(5548442-5548486)
chr4 (194-226)||(25421013-25421045)
[»] chr8 (10 HSPs)
chr8 (1-165)||(41637160-41637323)
chr8 (104-226)||(20066411-20066533)
chr8 (149-227)||(41637340-41637418)
chr8 (51-176)||(12819811-12819933)
chr8 (166-233)||(41637417-41637484)
chr8 (105-201)||(20066926-20067022)
chr8 (51-98)||(11080818-11080866)
chr8 (1-37)||(20066322-20066358)
chr8 (114-176)||(4808047-4808107)
chr8 (51-99)||(42307757-42307806)
[»] chr6 (5 HSPs)
chr6 (51-176)||(1756537-1756659)
chr6 (63-181)||(18498268-18498382)
chr6 (104-179)||(21455467-21455542)
chr6 (124-226)||(23638777-23638879)
chr6 (51-135)||(682537-682618)
[»] chr7 (8 HSPs)
chr7 (52-226)||(19218645-19218816)
chr7 (1-181)||(40918040-40918218)
chr7 (55-151)||(43006676-43006769)
chr7 (55-126)||(19217892-19217963)
chr7 (56-135)||(7147635-7147709)
chr7 (55-103)||(29658397-29658446)
chr7 (51-98)||(22794127-22794175)
chr7 (1-33)||(36396051-36396083)
[»] scaffold0041 (3 HSPs)
scaffold0041 (1-181)||(54877-55055)
scaffold0041 (51-93)||(917-960)
scaffold0041 (1-30)||(973-1002)
[»] scaffold0034 (1 HSPs)
scaffold0034 (51-135)||(98321-98402)
[»] scaffold0171 (1 HSPs)
scaffold0171 (51-135)||(29007-29088)
[»] scaffold0081 (1 HSPs)
scaffold0081 (160-226)||(42762-42829)
[»] chr2 (1 HSPs)
chr2 (2-147)||(40542474-40542617)
[»] scaffold0065 (1 HSPs)
scaffold0065 (63-93)||(35647-35677)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 39349801 - 39350052
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaacttcaacaaaaatcacataattaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  39349801 tacaacattcatcaatcttcatcttcttcataaaaaatctaattttttttctttcaaaaattaccatttcaacttcaacaaaaaccacataattaaacac 39349900  T
Q  101 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39349901 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaattcaattc 39350000  T
Q  201 atcttcaactacaaactcaattcaaatatgacaatattcacatcttcatctc 252  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39350001 atcttcaactacaaactcaattcaaatatgacaatattcatatcttcttctc 39350052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 25001908 - 25001996
Alignment:
Q  63 atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaa 152  Q
    ||||||||| |||||||||||| |||||||| |||||    |||| ||||||||||||||||||||| ||||| |||| |||||||||||    
T  25001908 atcatttcatcttcaacaaaaa-cacataatcaaacaaacccttagatctagaattaacatcaccactatcatctaacacacaatcaaaa 25001996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 1011184 - 1011249
Alignment:
Q  123 tcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaacca 188  Q
    ||||||| ||||| |||||||||||||||| |||||   ||||||||||||||||||||| |||||    
T  1011184 tcaccactatcatctaactcacaatcaaaactaacatcaatttatcaaattcatcacctttaacca 1011249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 30915759 - 30915840
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||| ||   |||||| || |||||||| ||||||||||||    
T  30915759 ctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac-ct---ttaaatttataattaacaccaccaccatcat 30915840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 25002194 - 25002257
Alignment:
Q  162 atttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 226  Q
    ||||||| ||| ||||||||||||| |||||| || |||||||||||| ||||||||||| ||||    
T  25002194 atttatccaatccatcaccttcaacaacaaattca-ttcatcttcaaccacaaactcaatgcaaa 25002257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 33362420 - 33362372
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  33362420 ctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 33362372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 30673650 - 30673678
Alignment:
Q  104 cttaaatctagaattaacatcaccaccat 132  Q
    |||||||||||||||||||||||||||||    
T  30673650 cttaaatctagaattaacatcaccaccat 30673678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40187844 - 40188069
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaacttcaacaaaaatcacataattaaacac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40187844 tacaacattcatcaatcttcatcttcttcataaaatatccaatattttt-ctttcaaaaattatcatttcaacttcaacaaaaaccacataattaaacac 40187942  T
Q  101 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattc 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40187943 ttacttaaatctagaattaacaccaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattc 40188042  T
Q  201 atcttcaactacaaactcaattcaaat 227  Q
    ||||||||| |||||||||||| ||||    
T  40188043 atcttcaacgacaaactcaatttaaat 40188069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50483828 - 50484053
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaacttcaacaaaaatcacataattaaacac 100  Q
    |||||||||||||||||||||||||||||||||||||| |||        |||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  50483828 tacaacattcatcaatcttcatcttcttcataaaaaattcaattttttt-cttttaaaaattatcatttcaacttcaacaaaaaccacataattaaacac 50483926  T
Q  101 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattc 200  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  50483927 ttacttaaatctagaattggcaccaccaccatcatataactcacaatcaaaattcacactcatttatcaaattcatcaccttcaaccacaaatccaaatc 50484026  T
Q  201 atcttcaactacaaactcaattcaaat 227  Q
    ||||||||| |||||||||||| ||||    
T  50484027 atcttcaaccacaaactcaatttaaat 50484053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 40188068 - 40188154
Alignment:
Q  166 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgacaatattcacatcttcatctc 252  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  40188068 atcaaattcatcaccttcaaccacaaattcaattcatcttcaactacaaactcaattcaaatatgacaatattcatatcttcttctc 40188154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 209
Target Start/End: Original strand, 40722141 - 40722246
Alignment:
Q  104 cttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatc 203  Q
    ||||||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||||||| |||    
T  40722141 cttaaatctagaattaacaccaccatcttcatctaactcacaatcaaaattaacactcatttatcaaatccatcgccttcaaccgtaaatccaatttatc 40722240  T
Q  204 ttcaac 209  Q
    ||||||    
T  40722241 ttcaac 40722246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 51694336 - 51694165
Alignment:
Q  52 tttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaa 150  Q
    ||||||||||| ||||||||||||||||| |||| ||||| || ||| |    ||||||||||||||||| |||||||| ||||    ||||| ||||||    
T  51694336 tttcaaaaattcatcatttcaacttcaaccaaaa-cacatgatcaaataaacccttaaatctagaattaagatcaccactatca----actcataatcaa 51694242  T
Q  151 aattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 226  Q
    || |||||  |||||||||||||||||||||| ||| | |||||  | |||||||||| | ||||||||||||||||    
T  51694241 aactaacatccatttatcaaattcatcacctttaacgataaatcagatttcatcttcatccacaaactcaattcaaa 51694165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 50484052 - 50484119
Alignment:
Q  166 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 233  Q
    ||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||| |||||    
T  50484052 atcaatttcatcaccctcaaccacaaattcaattcatcttcaactgcaaactcaattccaatctgaca 50484119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 40722775 - 40722712
Alignment:
Q  138 aactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 201  Q
    |||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||  |||||||    
T  40722775 aactcacaatcaaaattaacacccatttatcaaatccatcatcttcaaccagaaactcaattca 40722712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 49619659 - 49619578
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||||| |||||||||||||||||||||| |||| ||| ||||    | |||||| ||||||||||| ||||||||||||    
T  49619659 ctttcaaaaattcatcatttcaacttcaacaaaaaccacaaaatcaaac----atttaaatttagaattaacaccaccaccatcat 49619578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 16217727 - 16217823
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatca 149  Q
    |||||||||||| ||||||||||| ||| |||||| || ||||| |||    | ||||||||| |||| |||| |||||||||||| |||||||||||||    
T  16217727 ctttcaaaaattcatcatttcaacatcatcaaaaa-cagataatcaaa----tccttaaatctggaataaacaccaccaccatcatctaactcacaatca 16217821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 51693412 - 51693483
Alignment:
Q  55 caaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcac 126  Q
    |||||||| |||||||||||||||||||||| |||||||| ||| |    |||||||||||||||||||||||    
T  51693412 caaaaattcatcatttcaacttcaacaaaaa-cacataatcaaataaacccttaaatctagaattaacatcac 51693483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 52439114 - 52439077
Alignment:
Q  56 aaaaattatcatttcaacttcaacaaaaatcacataat 93  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  52439114 aaaatttatcatttcaacttcaataaaaatcacataat 52439077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40722052 - 40722088
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaa 37  Q
    |||||||||||||||||||| || |||||||||||||    
T  40722052 tacaacattcatcaatcttcgtcatcttcataaaaaa 40722088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 54353265 - 54353489
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaacttcaacaaaaatcacataattaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  54353265 tacaacattcatcaatcttcatcttcttcataaaaaatccaattttttt-ctttcaaaaattatcatttcaacttcaacaaaaaccacataattaaacac 54353363  T
Q  101 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaa-ttaacactcatttatcaaattcatcaccttcaaccacaaatccaatt 199  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54353364 ttacttaaatctagaattaacaccaccaccatcatataact--caatcaaaatttaacactcatttatcaaattcatcaccttcaaccacaaatccaatt 54353461  T
Q  200 catcttcaactacaaactcaattcaaat 227  Q
    |||||||||| |||||||||||| ||||    
T  54353462 catcttcaacgacaaactcaatttaaat 54353489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 54353488 - 54353574
Alignment:
Q  166 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgacaatattcacatcttcatctc 252  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  54353488 atcaaattcatcaccttcaactacaaattcaattcatcttcaactacaaactcaattcaaatctgacaatattcatatcttcttctc 54353574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 36627192 - 36627272
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||      ||||||||| |||||||| ||| ||||||||    
T  36627192 ctttcaaaaatttatcatttcaacttcaacaaaaatcacataatcaaac-----tttaaatctacaattaacaccacaaccatcat 36627272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 14206612 - 14206575
Alignment:
Q  56 aaaaattatcatttcaacttcaacaaaaatcacataat 93  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  14206612 aaaatttatcatttcaacttcaataaaaatcacataat 14206575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 14214360 - 14214323
Alignment:
Q  56 aaaaattatcatttcaacttcaacaaaaatcacataat 93  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  14214360 aaaatttatcatttcaacttcaataaaaatcacataat 14214323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 68 - 227
Target Start/End: Complemental strand, 48501022 - 48500863
Alignment:
Q  68 ttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttat 167  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||    
T  48501022 ttcaacttcaacaaaaaccacataattaaacacttacttaaatctagaattaacaccaccaccatcatatagctcacaatcaaaattaacacccatttat 48500923  T
Q  168 caaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 227  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  48500922 caaattcatcatcttcaaccacaaatccaattcatcttcaaccacaaactcaatttaaat 48500863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 48500864 - 48500797
Alignment:
Q  166 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 233  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||    
T  48500864 atcaaattcatcaccttcaatcataaattcaattcatcttcaactacaaactcaattcaaatctgaca 48500797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 23757715 - 23757622
Alignment:
Q  121 catcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaa 215  Q
    ||||||||||||||| || |||| |||||||| |||||||||||||||||| ||||||| || ||||| ||||| | |||||||||||| |||||    
T  23757715 catcaccaccatcatcta-ctcataatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatctagttcatcttcaaccacaaa 23757622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 226
Target Start/End: Complemental strand, 17522329 - 17522247
Alignment:
Q  144 caatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaa 226  Q
    ||||||||| |||||  ||||||||||||   ||||||| ||||| ||||| | |||||||||||| ||||||||||||||||    
T  17522329 caatcaaaactaacatacatttatcaaatctttcacctttaaccataaatctagttcatcttcaaccacaaactcaattcaaa 17522247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 5433143 - 5433072
Alignment:
Q  145 aatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaac 216  Q
    |||||||| |||||||||||||||||| ||||||| || ||||| ||||  | |||||||||||| ||||||    
T  5433143 aatcaaaactaacactcatttatcaaagtcatcactttaaaccataaatttagttcatcttcaaccacaaac 5433072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 5547177 - 5547256
Alignment:
Q  53 ttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||| ||   |||||| || |||||||| ||||||||||||    
T  5547177 ttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac-ct---ttaaatttataattaacaccaccaccatcat 5547256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 5236573 - 5236625
Alignment:
Q  172 ttcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattca 224  Q
    ||||||||||||||| ||||||||||||||  || ||| ||||||||||||||    
T  5236573 ttcatcaccttcaacaacaaatccaattcacatttaaccacaaactcaattca 5236625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 37642373 - 37642325
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  37642373 ctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 37642325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 55953101 - 55953198
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatca 149  Q
    |||||||||||| ||||||||||||| | |||||| || ||||| |||    |  |||||||| |||| |||| |||||||||||| |||||||||||||    
T  55953101 ctttcaaaaattcatcatttcaacttaatcaaaaaccatataatcaaa----tcattaaatctggaataaacaccaccaccatcatctaactcacaatca 55953196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 1273197 - 1273151
Alignment:
Q  105 ttaaatctagaattaacatcaccaccatcatataactcacaatcaaa 151  Q
    |||||||| |||| |||| |||||||||||| |||||||||||||||    
T  1273197 ttaaatctggaataaacaccaccaccatcatgtaactcacaatcaaa 1273151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 5548486 - 5548442
Alignment:
Q  54 tcaaaaattatcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||| | ||||||| ||||||||||||||||||||||| ||||    
T  5548486 tcaaaattcatcattttaacttcaacaaaaatcacataatcaaac 5548442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 25421013 - 25421045
Alignment:
Q  194 ccaattcatcttcaactacaaactcaattcaaa 226  Q
    |||||||||||||||| ||||||||||||||||    
T  25421013 ccaattcatcttcaaccacaaactcaattcaaa 25421045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 41637160 - 41637323
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaacttcaacaaaaatcacataattaaacac 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  41637160 tacaacattcatcaatcttcatcttcttcataaaaaatc-aaatttttttctttcaaaaattatcatttcaacttcaacaaaaaccatataattaaacac 41637258  T
Q  101 ttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcattt 165  Q
    |||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||    
T  41637259 ttacttaaatctagaattaacaccgccaccaacatataactcacaatcaaaattaacactcattt 41637323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 226
Target Start/End: Original strand, 20066411 - 20066533
Alignment:
Q  104 cttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatc 203  Q
    ||||||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||  ||| |||||||| | |||||||||| |||    
T  20066411 cttaaatctagaattaacaccaccatcttcatctaactcacaatcaaaattaacactcatttatcaaatcaatcgccttcaactataaatccaatttatc 20066510  T
Q  204 ttcaactacaaactcaattcaaa 226  Q
    |||||| | ||||||||||||||    
T  20066511 ttcaaccataaactcaattcaaa 20066533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 41637340 - 41637418
Alignment:
Q  149 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaat 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  41637340 aaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaaccacaaactcaatttaaat 41637418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 12819933 - 12819811
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatca 149  Q
    |||||||||||| ||| |||||||||||||||||| ||||| ||||||| ||||    |||  ||||||||||| ||||||||||| | |||||||||||    
T  12819933 ctttcaaaaattcatcttttcaacttcaacaaaaaccacattattaaaccctta----aattaagaattaacataaccaccatcatcttactcacaatca 12819838  T
Q  150 aaattaacactcatttatcaaattcat 176  Q
    ||| |||||| ||||||||||||||||    
T  12819837 aaactaacacccatttatcaaattcat 12819811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 41637417 - 41637484
Alignment:
Q  166 atcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattcaaatatgaca 233  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  41637417 atcaaattcatcaccctcaaccacaaattcaattcatcttcaactacaaactcaattcaaatctgaca 41637484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 20067022 - 20066926
Alignment:
Q  105 ttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattca 201  Q
    ||||||||| ||||||||  ||||||||||  |||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||  |||||||    
T  20067022 ttaaatctaaaattaacacaaccaccatcaactaactcacaatcaaaattaacacctatttatcaaatccatcatcttcaaccacaaactcaattca 20066926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 11080866 - 11080818
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  11080866 ctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 11080818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20066322 - 20066358
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaa 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  20066322 tacaacattcatcaatcttcatcatcttcataaaaaa 20066358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 4808047 - 4808107
Alignment:
Q  114 gaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcat 176  Q
    |||| |||| |||||||||||| || |||||||||||||| || |||||||||||||||||||    
T  4808047 gaataaacaccaccaccatcatcta-ctcacaatcaaaatcaa-actcatttatcaaattcat 4808107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 42307757 - 42307806
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaaca 99  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| |||||    
T  42307757 cttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaaca 42307806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 1756537 - 1756659
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatca 149  Q
    |||||||||||| ||||||||||||| |||||||| |||||||||||||     ||||||| |||||| ||||||||||||||||| |||||||||||||    
T  1756537 ctttcaaaaatttatcatttcaactttaacaaaaaccacataattaaac----ccttaaatttagaatcaacatcaccaccatcatctaactcacaatca 1756632  T
Q  150 aaattaacactcatttatcaaattcat 176  Q
    ||| |||||| ||||||| ||||||||    
T  1756633 aaactaacacccatttattaaattcat 1756659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 181
Target Start/End: Original strand, 18498268 - 18498382
Alignment:
Q  63 atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactca 162  Q
    |||||||||||||||||||||| |||||||| |||| ||   |||||||||||||||| | || ||| |||||  |||||| |||||||| |||||| ||    
T  18498268 atcatttcaacttcaacaaaaaccacataatcaaac-ct---ttaaatctagaattaataacatcactatcattaaactcataatcaaaactaacaccca 18498363  T
Q  163 tttatcaaattcatcacct 181  Q
    ||||||||||| |||||||    
T  18498364 tttatcaaatttatcacct 18498382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 21455467 - 21455542
Alignment:
Q  104 cttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcac 179  Q
    ||||||||||||||||||| |||||||||||| ||||||| ||| |||| |||||| ||| |||||||||||||||    
T  21455467 cttaaatctagaattaacaccaccaccatcatctaactcaaaattaaaactaacacccatgtatcaaattcatcac 21455542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 226
Target Start/End: Original strand, 23638777 - 23638879
Alignment:
Q  124 caccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcaccttcaaccacaaatccaattcatcttcaactacaaactcaattc 223  Q
    |||||||||||| ||| ||| |||||||| |||||||||||| ||||||||||||||||||||||| ||| ||  || |||| ||  | |||||||||||    
T  23638777 caccaccatcatctaattcataatcaaaactaacactcatttgtcaaattcatcaccttcaaccactaattcagctcctctttaaacaaaaactcaattc 23638876  T
Q  224 aaa 226  Q
    |||    
T  23638877 aaa 23638879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 682537 - 682618
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| |||| ||   |||||| || |||||||| ||||||||||||    
T  682537 cttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac-ct---ttaaatttataattaacaccaccaccatcat 682618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 226
Target Start/End: Complemental strand, 19218816 - 19218645
Alignment:
Q  52 tttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaa 150  Q
    ||||||||||| |||||||||||||||||||||| ||||| || ||| |    ||||||||||||||||| |||||||| ||||    ||||| ||||||    
T  19218816 tttcaaaaattcatcatttcaacttcaacaaaaa-cacatgatcaaataaacccttaaatctagaattaagatcaccactatca----actcataatcaa 19218722  T
Q  151 aattaacactcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 226  Q
    || |||||  |||||||||||||||||||||| ||||| |||||  | |||||||||| | ||||||||||||||||    
T  19218721 aactaacatccatttatcaaattcatcacctttaaccataaatcagatttcatcttcatccacaaactcaattcaaa 19218645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40918218 - 40918040
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaat-ccaannnnnnnnctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||||||||||||||||||||||||||||||||||  ||||          || ||||||| || ||||||||||||||||||| |||||||| ||||    
T  40918218 tacaacattcatcaatcttcatcttcttcataaaaaaagccaaaaaaaaattcttaaaaaattcatgatttcaacttcaacaaaaaccacataatcaaac 40918119  T
Q  99 acttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcacct 181  Q
     ||   ||||||||| |||||||| || ||  ||||| ||||||| |||||||| |||||||||||||||||||| |||||||    
T  40918118 -ct---ttaaatctataattaacaacatcagtatcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 40918040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 43006676 - 43006769
Alignment:
Q  55 caaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaa 151  Q
    |||||||| |||||||||||||||  |||||||| ||||| |||    | ||||||||| |||| |||| |||||||||||| |||||||||||||||    
T  43006676 caaaaattcatcatttcaacttcataaaaaatcatataatcaaa----tccttaaatctggaataaacaccaccaccatcatgtaactcacaatcaaa 43006769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 19217892 - 19217963
Alignment:
Q  55 caaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcac 126  Q
    |||||||| |||||||||||||||||||||| |||||||| ||| |    |||||||||||||||||||||||    
T  19217892 caaaaattcatcatttcaacttcaacaaaaa-cacataatcaaataaacccttaaatctagaattaacatcac 19217963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 7147709 - 7147635
Alignment:
Q  56 aaaaattatcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||| |||||||||||| |||||||||||||||||||| ||||      ||||||||| |||||||| ||| ||||||||    
T  7147709 aaaatttatcatttcaatttcaacaaaaatcacataatcaaac-----tttaaatctacaattaacaccacaaccatcat 7147635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 29658446 - 29658397
Alignment:
Q  55 caaaaatt-atcatttcaacttcaacaaaaatcacataattaaacactta 103  Q
    |||||||| |||||||||||||||||||||| |||||||| |||| ||||    
T  29658446 caaaaattcatcatttcaacttcaacaaaaaccacataatcaaactctta 29658397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 22794175 - 22794127
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||| ||||||| |||||||||||||||||||||| |||||||| ||||    
T  22794175 cttttaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac 22794127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36396051 - 36396083
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataa 33  Q
    ||||||||||||||||||||||| |||||||||    
T  36396051 tacaacattcatcaatcttcatcatcttcataa 36396083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54877 - 55055
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttcataaaaaat-ccaannnnnnnnctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaac 98  Q
    |||||||||||||||||||||||||||||||||||||  ||||          || ||||||| || ||||||||||||||||||| |||||||| ||||    
T  54877 tacaacattcatcaatcttcatcttcttcataaaaaaagccaaaaaaaaattcttaaaaaattcatgatttcaacttcaacaaaaaccacataatcaaac 54976  T
Q  99 acttacttaaatctagaattaacatcaccaccatcatataactcacaatcaaaattaacactcatttatcaaattcatcacct 181  Q
     ||   ||||||||| |||||||| || ||  ||||| ||||||| |||||||| |||||||||||||||||||| |||||||    
T  54977 -ct---ttaaatctataattaacaacatcagtatcatttaactcataatcaaaactaacactcatttatcaaatttatcacct 55055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 960 - 917
Alignment:
Q  51 ctttcaaaaatta-tcatttcaacttcaacaaaaatcacataat 93  Q
    |||| |||||||| ||||||||||||||||||||||||||||||    
T  960 ctttaaaaaattaatcatttcaacttcaacaaaaatcacataat 917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 1002 - 973
Alignment:
Q  1 tacaacattcatcaatcttcatcttcttca 30  Q
    ||||||||||||||||||||||||||||||    
T  1002 tacaacattcatcaatcttcatcttcttca 973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 98321 - 98402
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||    | |||||| || |||||||| ||||||||||||    
T  98321 ctttcaaaaattcatcatttcaacttcaacaaaaaccacaaaattaaac----atttaaatttataattaacaccaccaccatcat 98402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 135
Target Start/End: Complemental strand, 29088 - 29007
Alignment:
Q  51 ctttcaaaaatt-atcatttcaacttcaacaaaaatcacataattaaacacttacttaaatctagaattaacatcaccaccatcat 135  Q
    |||||||||||| |||||||||||||||||||||| |||||||| |||| ||   ||||||||| |||||||| ||| ||||||||    
T  29088 ctttcaaaaattcatcatttcaacttcaacaaaaaccacataatcaaac-ct---ttaaatctacaattaacaccacaaccatcat 29007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 42829 - 42762
Alignment:
Q  160 tcatttatcaaattcatcaccttcaaccacaaatc-caattcatcttcaactacaaactcaattcaaa 226  Q
    ||||||||||||||||||||||| ||||| |||||    |||||||||||| ||||||||||||||||    
T  42829 tcatttatcaaattcatcacctttaaccataaatcaggtttcatcttcaaccacaaactcaattcaaa 42762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 147
Target Start/End: Original strand, 40542474 - 40542617
Alignment:
Q  2 acaacattcatcaatcttcatcttcttcataaaaaatccaannnnnnnnctttcaaaaattatcatttcaactt--caacaaaaatcacataattaaaca 99  Q
    |||||||||||||||||||||| ||||||||||||| ||||        |||| |||||||||||||  |||||   || |||||  ||||||||||||     
T  40542474 acaacattcatcaatcttcatcatcttcataaaaaacccaattttttttctttaaaaaattatcattaaaactttaaaaaaaaaacgacataattaaac- 40542572  T
Q  100 cttacttaaatctagaattaacatcaccaccatcatataactcacaat 147  Q
       | ||||||||| ||||||||  ||||||||||  |||||||||||    
T  40542573 ---agttaaatctaaaattaacacaaccaccatcaactaactcacaat 40542617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 35647 - 35677
Alignment:
Q  63 atcatttcaacttcaacaaaaatcacataat 93  Q
    |||||||||||||||||||||||||||||||    
T  35647 atcatttcaacttcaacaaaaatcacataat 35677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University