View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_21 (Length: 257)
Name: NF2725_high_21
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 44945497 - 44945722
Alignment:
| Q |
18 |
aaccacaatccagcaataacctgataacaggacnnnnnnncaccttagtcctactaggctatctaaatcacattgcaaaatggaaaataaaattgaattt |
117 |
Q |
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| T |
44945497 |
aaccacaatccagcaataacctgataacaggacaaaaaaacaccttagtcctactaggctatctaaatcacattgcaaaatggaaaataaaattgaattt |
44945596 |
T |
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| Q |
118 |
gatatgaatggatatgattcaagcttaaagcatagctttgtgtgtggatgaaagatggaacaacttacggtaagaaacttcttgatatctctcccagttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44945597 |
gatatgaatggatatgattcaagcttaaagcatagctttgtgtgtggatgaaagacggaacaacttacggtaagaaacttcttgatatctctcccagttc |
44945696 |
T |
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| Q |
218 |
caatttccctcaaaatagcgaaaact |
243 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44945697 |
caatttccctcaaaatagcgaaaact |
44945722 |
T |
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