View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2725_high_27 (Length: 247)
Name: NF2725_high_27
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_27 |
 | |
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| [»] chr3 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 677866 - 677992
Alignment:
| Q |
121 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
677866 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctgcataactcc |
677965 |
T |
|
| Q |
221 |
tacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
677966 |
tacaacaaccaacacaataacaaactt |
677992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 675704 - 675810
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
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|
| T |
675704 |
aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
675803 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
675804 |
gatgtgg |
675810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 29636692 - 29636567
Alignment:
| Q |
121 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
29636692 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatgatcttgatctttttaaaaaattctccataa-tcc |
29636594 |
T |
|
| Q |
221 |
tacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
29636593 |
tacaataaccaacacaataacaaactt |
29636567 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 29638854 - 29638748
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
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|
| T |
29638854 |
aatataagtgacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
29638755 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
29638754 |
gatgtgg |
29638748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 12955632 - 12955590
Alignment:
| Q |
205 |
aattctccataactcctacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
12955632 |
aattctccataactcctacaacaaccaacacaataacaaactt |
12955590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 121 - 247
Target Start/End: Complemental strand, 19141251 - 19141125
Alignment:
| Q |
121 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc |
220 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
19141251 |
gatctgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctgcataactcc |
19141152 |
T |
|
| Q |
221 |
tacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
19141151 |
tacaacaaccaacacaataacaaactt |
19141125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 41500115 - 41500221
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
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| T |
41500115 |
aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
41500214 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
41500215 |
gatgtgg |
41500221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 19142014 - 19141908
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||| |
|
|
| T |
19142014 |
aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaatgctcgttcaacggtt |
19141915 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
19141914 |
gatgtgg |
19141908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 34295362 - 34295320
Alignment:
| Q |
205 |
aattctccataactcctacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34295362 |
aattctccataactcctacaacaaccaacacaataacaaactt |
34295320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 121 - 247
Target Start/End: Original strand, 33052879 - 33053005
Alignment:
| Q |
121 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
33052879 |
gatccgatggtaactctttcaaattacatgaaacatgttgagaactagatccttgctcatgggatggtaattttcttttaaaaaaattctccataactcc |
33052978 |
T |
|
| Q |
221 |
tacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
| |||| |||||||||||||||||||| |
|
|
| T |
33052979 |
tgcaatcaccaacacaataacaaactt |
33053005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 4816239 - 4816133
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
4816239 |
aatataagtcacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
4816140 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
4816139 |
gatgtgg |
4816133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 22581737 - 22581631
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
22581737 |
aatataagtcacgagacaatcattcatcccatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
22581638 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
22581637 |
gatgtgg |
22581631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 34059808 - 34059702
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| ||| |
|
|
| T |
34059808 |
aatataagttacgagacaatcattcatccaatcatctcccattcgattacgcaatctagacttcacaatcttcatagcagaaaaggctcgttcaacggtt |
34059709 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
34059708 |
gatgtgg |
34059702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 13391159 - 13391069
Alignment:
| Q |
156 |
tgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcctacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
|||||||||||||||||||||||||| ||| || | || | |||||||||||||||| |||||||||| |||| ||||||||| |||||| |
|
|
| T |
13391159 |
tgttgagaactagatccttgctcatgcgattgtaattttc-tcttaaaaaattctccattactcctacaacaacccacacaataaaaaactt |
13391069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 8265691 - 8265774
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaag |
94 |
Q |
| |
|
|||||||||||| ||||||||| | || || |||||| ||||| ||||| |||||||| ||||||| |||||||||| ||||| |
|
|
| T |
8265691 |
aatataagtcacaagacaatcattcattcattcatct-tcatttgattacacaatctagttttcacaaccttcatagcataaaag |
8265774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 46339 - 46234
Alignment:
| Q |
121 |
gatccgatggtaactcttctaaattacatgaaacatgttgagaactagatccttgctcatgggatggtcttgatctttttaaaaaattctccataactcc |
220 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
46339 |
gatccgatggtaactcttccaaattacatgaaa---gttgagaactagatccttgctcgtgggatggtaattttctttttaaaaaattctccataactcc |
46243 |
T |
|
| Q |
221 |
tacaataac |
229 |
Q |
| |
|
||||||||| |
|
|
| T |
46242 |
tacaataac |
46234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 250401 - 250507
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatagcaaaaaagactcgttcaactgtt |
109 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||| ||||| |||||||||||||||||||||||||||| ||| | |||||||||| ||| |
|
|
| T |
250401 |
aatataagtcacgagacaatcattcatccaatcatctcccatttgattacacaatctagacttcacaatcttcatagcagaaatggctcgttcaacggtt |
250500 |
T |
|
| Q |
110 |
gatgtgg |
116 |
Q |
| |
|
||||||| |
|
|
| T |
250501 |
gatgtgg |
250507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 3694242 - 3694288
Alignment:
| Q |
201 |
aaaaaattctccataactcctacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3694242 |
aaaaaattctccataactcctacaacaaccaacacaataacaaactt |
3694288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 39051415 - 39051460
Alignment:
| Q |
201 |
aaaaaattctccataactcctacaataaccaacacaataacaaact |
246 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39051415 |
aaaaaattctccataactcctacaacaaccaacacaataacaaact |
39051460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 40142265 - 40142189
Alignment:
| Q |
10 |
aatataagtcacgagacaatcagttatccaatcatctctcattcgattatgcaatctagacttcacaatcttcatag |
86 |
Q |
| |
|
||||||||||| ||||||||| | ||||| ||||||| |||| ||||||||||| ||| ||| | ||||||||||| |
|
|
| T |
40142265 |
aatataagtcatgagacaatcgttcatccactcatctcccatttgattatgcaatatagtcttgaaaatcttcatag |
40142189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 3761299 - 3761340
Alignment:
| Q |
205 |
aattctccataactcctacaataaccaacacaataacaaactt |
247 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
3761299 |
aattctccataactcctacaacaa-caacacaataacaaactt |
3761340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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