View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_28 (Length: 243)
Name: NF2725_high_28
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 3497428 - 3497564
Alignment:
| Q |
92 |
cgaagaatgaacaaagagagataaaattcaatcaattccaattcagtaccgtgaacttcatcgccaacatcaggagtatcccaaccttcaccttctttga |
191 |
Q |
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| T |
3497428 |
cgaagaatgaacaaagagagataaaattcaatcaattccaattcagtaccgtgaacttcatcgccaacatcaggagtatcccaaccttcaccttctttga |
3497527 |
T |
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| Q |
192 |
gaagcttcttcttcaaaccttgctttccgatttcctt |
228 |
Q |
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| T |
3497528 |
gaagcttcttcttcaaaccttgctttccgatttcctt |
3497564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 34977358 - 34977408
Alignment:
| Q |
160 |
atcaggagtatcccaaccttcaccttctttgagaagcttcttcttcaaacc |
210 |
Q |
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| T |
34977358 |
atcaggagtttcccacccttcaccttccttaacaagcttcttcttcaaacc |
34977408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 3497339 - 3497372
Alignment:
| Q |
3 |
caagcaacgttccagtataatgaactacacatta |
36 |
Q |
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| T |
3497339 |
caagcaacgttccggtataatgaactacacatta |
3497372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 18850726 - 18850769
Alignment:
| Q |
161 |
tcaggagtatcccaaccttcaccttctttgagaagcttcttctt |
204 |
Q |
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| T |
18850726 |
tcaggagtatcccaaccttcaccaagtttgagaagcttcttctt |
18850769 |
T |
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