View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_29 (Length: 238)
Name: NF2725_high_29
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 4012511 - 4012732
Alignment:
| Q |
1 |
caccttaaaagtcggatttgtagggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012511 |
caccttaaaagtcggatttgtagggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatg |
4012610 |
T |
|
| Q |
101 |
ttacgcttcaaatgtctagtcctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtggaaggcatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4012611 |
ttacgcttcaaatgtctagtcctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtgggaggcatctg |
4012710 |
T |
|
| Q |
201 |
tcatctttcaaaccagttttgt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
4012711 |
tcatctttcaaaccagttttgt |
4012732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 13976685 - 13976464
Alignment:
| Q |
1 |
caccttaaaagtcggatttgtagggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976685 |
caccttaaaagtcggatttgtagggtttagttaggcctaatccacattatatgatgccttcagagtctatccaagatctgatgggccactcgcagtcatg |
13976586 |
T |
|
| Q |
101 |
ttacgcttcaaatgtctagtcctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtggaaggcatcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13976585 |
ttacgcttcaaatgtctagtcctaagcgtgatggggaggtacgagtcttgcattagatgagataggaaatgaaaatgagtatataagtgggaggcatctg |
13976486 |
T |
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| Q |
201 |
tcatctttcaaaccagttttgt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
13976485 |
tcatctttcaaaccagttttgt |
13976464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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