View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_3 (Length: 510)
Name: NF2725_high_3
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 310 - 493
Target Start/End: Complemental strand, 4792095 - 4791914
Alignment:
| Q |
310 |
atacgaataatccaaatgatatatctatatattaacattaataatcatcaaaataacctaacttacattctaattagtaatgaatcctaatattaaatat |
409 |
Q |
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| T |
4792095 |
atacgaataatccaaatgatatatctatatattaacattaataatcatcaaaataacctaacttacattctaattagtaatgaatcctaatattaaatat |
4791996 |
T |
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| Q |
410 |
aaacaaatcctagaaactgtcaattataggaaacacttccattcatgacgtgcgacatcatctattccttgtgagggttcttct |
493 |
Q |
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| T |
4791995 |
aaacaaatcctagtaactgtcaattataggaaacacttccattcatgacgtgcgacatcatc--ttccttgtgagggttcttct |
4791914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 4793259 - 4793074
Alignment:
| Q |
8 |
aaaggaagtgaaaatgttaaagagcgattggattttgcattcatttaaagtaataannnnnnncttaattaaatcgcaggttttctctattcaccggtgc |
107 |
Q |
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| T |
4793259 |
aaaggaagtgaaaatgttaaagagcgattggattttgcattcaattaaagtaataatttttttcttaattaaatcgcaggttttctctattcaccggtgc |
4793160 |
T |
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| Q |
108 |
cgatctcggcaatgccgcccgtggttgcattcacatttgttttcatgtattattacatgcttcctatggtatatagttggaccacgagg |
196 |
Q |
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| T |
4793159 |
cgatctcggcaatgccgcccgtggttgcattcacattagttttcatgt---attacatgcttcctatggtatatagttggaccacgagg |
4793074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 4793023 - 4792931
Alignment:
| Q |
194 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcccagtgaaattcaaacactaggaaattatttg |
286 |
Q |
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| T |
4793023 |
aggaggggcgttgatctttggctatttctacatagcactcatgttgactgcaattcatttcctagtgaaattcaaacactaggaaatgatttg |
4792931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 4788326 - 4788376
Alignment:
| Q |
350 |
ataatcatcaaaataacctaacttacattctaattagtaatgaatcctaat |
400 |
Q |
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| T |
4788326 |
ataatcatcaaaataccctaacttacattttaattagtaatgaatcctaat |
4788376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 414 - 472
Target Start/End: Complemental strand, 4797474 - 4797416
Alignment:
| Q |
414 |
aaatcctagaaactgtcaattataggaaacacttccattcatgacgtgcgacatcatct |
472 |
Q |
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| T |
4797474 |
aaatcctagtaactgtcaattataggatacctttccattcatgatgtttgacatcatct |
4797416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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