View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2725_high_6 (Length: 455)
Name: NF2725_high_6
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 39625362 - 39624928
Alignment:
| Q |
1 |
ccctagttaaagctatctgaaaataatttgttcatcataccttgaaaggaatacatgagagattcatccccaacatgagatcttacttgatttgtcaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39625362 |
ccctagttaaagctatctgaaaataatttgttcatcataccttgaaaggaatacatgagagattcatcaccaacatgagatcttacttgatttgtcaata |
39625263 |
T |
|
| Q |
101 |
caattggaatgcgtgaaaattcagcaagtgacctgaactggttcaatatcagaacttccttcaagaagaaacatgtaatttcacttcataaaatctcaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625262 |
caattggaatgcgtgaaaattcagcaagtgacctgaactggttcaatatcagaacttccttcaagaagaaacatgtaatttcacttcataaaatctcaca |
39625163 |
T |
|
| Q |
201 |
agtggttcttacttgatgaaagaaacgtgccaacccaatgcttgttgcctggaagccccacaatcatgttcactgaatagaaaaagtgaccaatttatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625162 |
agtggttcttacttgatgaaagaaacgtgccaacccaatgcttgttgcctggaagccccacaatcatgttcactgaatagaaaaagtgaccaatttatat |
39625063 |
T |
|
| Q |
301 |
gcatcatgagacattatgagtaggagtatagcacgagaatgataagccgcaacattcaattaggagggagggtcccaatttttgaattagttacaacagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39625062 |
gcatcatgagacattatgagtaggagtatagcacgagaatgataagccgcaacattcaattaggagggagggtcccaatttttgaattagttacaacagt |
39624963 |
T |
|
| Q |
401 |
tacagtgtttcaaaacaactaaccaactattagtt |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
39624962 |
tacagtgtttcaaaacaactaaccaactattagtt |
39624928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University