View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_7 (Length: 450)
Name: NF2725_high_7
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 10219369 - 10219117
Alignment:
| Q |
18 |
aattggagtggtgttggtgctgattctaaacgttctatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcat |
117 |
Q |
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| T |
10219369 |
aattggagtggtgttggtgctgattctaaacgttctatgcttcttttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcat |
10219270 |
T |
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| Q |
118 |
tcattctca--gatactatgttatttcatctggttcagttgttgtgatcgatcacca---tataaaaatcactcacttccaccaaagtgcaagtcccaca |
212 |
Q |
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| T |
10219269 |
tcattctcacagatactatgttatttcatctggttcagttgt---gatcgatcaccaccatataaaaaa---tcacttccaccaaactgcaagtcccaca |
10219176 |
T |
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| Q |
213 |
tcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctcagctt |
271 |
Q |
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| T |
10219175 |
tcaaccaattcataaactaaactatgctgcttacttataaaatgaaaagacctcagctt |
10219117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 13853932 - 13854027
Alignment:
| Q |
28 |
gtgttggtgctgattctaaacgttctatgcttctgttgcttcctagacttaattctcgtacttctctccatagttcttctatcttctcattcattc |
123 |
Q |
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| T |
13853932 |
gtgttggtggagattctaaacgttctatggttctgttgcttcctaaacttaattctcgtacttctctccatagttcttctatcttctcattcattc |
13854027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 10102729 - 10102802
Alignment:
| Q |
206 |
tcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctcagcttgtcaaaat |
279 |
Q |
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| T |
10102729 |
tcccacatcgaccaattcataaactaaactatgctgcttacttataaaacgaaaagacctcagcttgttaaaat |
10102802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 205 - 266
Target Start/End: Complemental strand, 10212463 - 10212402
Alignment:
| Q |
205 |
gtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
266 |
Q |
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| T |
10212463 |
gtcccacatctaccaatgcataaactaaactatgctgatcacatataaaatgaaatgacctc |
10212402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 10105811 - 10105867
Alignment:
| Q |
203 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaa |
259 |
Q |
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| T |
10105811 |
aagtcccacatcgcccagttcataaactaaactatgcagctttcatataaaatgaaa |
10105867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 10109224 - 10109275
Alignment:
| Q |
203 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
254 |
Q |
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| T |
10109224 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10109275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 10209914 - 10209863
Alignment:
| Q |
203 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
254 |
Q |
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| T |
10209914 |
aagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaa |
10209863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 12104737 - 12104686
Alignment:
| Q |
203 |
aagtcccacatcgaccaatttataaactaaactatgctgcttacttataaaa |
254 |
Q |
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| T |
12104737 |
aagtcccacatcgaccaattcataaactaaattatgcagctcacatataaaa |
12104686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 13855940 - 13856002
Alignment:
| Q |
204 |
agtcccacatcgaccaatttataaactaaactatgctgcttacttataaaatgaaaagacctc |
266 |
Q |
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||||||||||| ||||||| |||||||||||||||| | | || ||||||| |||| |||||| |
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| T |
13855940 |
agtcccacatcaaccaattcataaactaaactatgcagttcacatataaaaagaaaggacctc |
13856002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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