View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2725_high_8 (Length: 445)

Name: NF2725_high_8
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2725_high_8
NF2725_high_8
[»] chr1 (13 HSPs)
chr1 (1-396)||(43989880-43990275)
chr1 (22-158)||(37473269-37473402)
chr1 (23-158)||(41195261-41195394)
chr1 (21-97)||(27976523-27976599)
chr1 (30-158)||(14331659-14331784)
chr1 (8-104)||(44931989-44932081)
chr1 (20-158)||(14576718-14576853)
chr1 (104-156)||(33541854-33541906)
chr1 (4-96)||(37769712-37769801)
chr1 (21-82)||(24915117-24915178)
chr1 (43-107)||(16145060-16145124)
chr1 (21-81)||(26678847-26678907)
chr1 (118-158)||(44217295-44217335)
[»] chr3 (9 HSPs)
chr3 (21-158)||(20880347-20880480)
chr3 (29-157)||(30956700-30956825)
chr3 (29-157)||(30972512-30972637)
chr3 (28-157)||(35959529-35959655)
chr3 (21-148)||(12862314-12862437)
chr3 (67-140)||(28795944-28796014)
chr3 (86-158)||(29002961-29003030)
chr3 (36-97)||(46778308-46778369)
chr3 (84-158)||(31365401-31365472)
[»] chr2 (8 HSPs)
chr2 (36-158)||(15757740-15757866)
chr2 (36-158)||(41407171-41407290)
chr2 (28-96)||(41812163-41812231)
chr2 (21-97)||(42659217-42659293)
chr2 (21-139)||(33319878-33319994)
chr2 (4-97)||(32592515-32592604)
chr2 (108-158)||(5745560-5745610)
chr2 (21-97)||(41241198-41241274)
[»] chr8 (8 HSPs)
chr8 (21-158)||(1058140-1058274)
chr8 (21-96)||(10758322-10758397)
chr8 (68-154)||(9130423-9130506)
chr8 (66-157)||(14956406-14956494)
chr8 (21-96)||(12497297-12497372)
chr8 (104-158)||(40981000-40981054)
chr8 (61-102)||(11861730-11861771)
chr8 (40-97)||(12976141-12976198)
[»] chr5 (7 HSPs)
chr5 (21-157)||(32372495-32372628)
chr5 (29-88)||(35445992-35446051)
chr5 (28-129)||(3932758-3932860)
chr5 (36-156)||(7319092-7319209)
chr5 (104-158)||(9202884-9202938)
chr5 (104-157)||(24030548-24030601)
chr5 (117-157)||(32021968-32022008)
[»] chr6 (6 HSPs)
chr6 (21-97)||(24626223-24626299)
chr6 (114-157)||(9604741-9604784)
chr6 (36-140)||(18076084-18076185)
chr6 (118-158)||(6538387-6538427)
chr6 (104-158)||(35069432-35069486)
chr6 (28-97)||(30536406-30536475)
[»] chr7 (8 HSPs)
chr7 (28-97)||(46078075-46078144)
chr7 (45-158)||(5947031-5947137)
chr7 (21-99)||(33266550-33266628)
chr7 (104-158)||(38500064-38500118)
chr7 (61-159)||(21568734-21568829)
chr7 (118-158)||(45004636-45004676)
chr7 (66-158)||(9210498-9210587)
chr7 (28-82)||(40252180-40252234)
[»] chr4 (8 HSPs)
chr4 (3-99)||(54069468-54069561)
chr4 (36-157)||(43505829-43505945)
chr4 (21-97)||(22030132-22030207)
chr4 (40-96)||(31851383-31851439)
chr4 (28-104)||(41336682-41336757)
chr4 (104-157)||(44863098-44863151)
chr4 (104-160)||(27029-27085)
chr4 (28-162)||(19494780-19494911)


Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 43990275 - 43989880
Alignment:
Q  1 tgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990275 tgacttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgt 43990176  T
Q  101 ttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttatgtgttgcttcatacatgtaatcactgtga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990175 ttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagactcggtctttatgtgttgcttcatacatgtaatcactgtga 43990076  T
Q  201 caatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatatagtggttaaaaatatctagataaagaatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43990075 caatggattatgtgcttgacagcaatattacataattgttttcttttttaacaggttaattaatattatatagtggttaaaaatatctagataaagaatg 43989976  T
Q  301 atatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctggagagcaaattgggtgtgtgatgtta 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989975 atatttgattccttaccctggataaggtttggtctcaatttgaatatgacaatatttgatcttgtagctggagagcaaattgggtgtgtgatgtta 43989880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 37473402 - 37473269
Alignment:
Q  22 tataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgctt 121  Q
    ||||| |||||||||||| | ||||||||||||||||| |||| |||||||||| |||||| ||||||||||||||||    || |||||| ||   |||    
T  37473402 tatagcatatacataaacgacttaactttgttttatcatttgctataaaaatagcttatgtaagcttatacataagtg---cttgtcatgataagaactt 37473306  T
Q  122 gtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||| |||| ||||||||| | | |||||||||||||    
T  37473305 gtgcaataagctgcaaataagttgtttatccaaacag 37473269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 41195261 - 41195394
Alignment:
Q  23 ataggatatacataaacaatttaactttgtt-ttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgctt 121  Q
    |||| ||||||| ||||| |||||||||  | |||||| || | ||||||||||||||||| | |||||||||||| |   ||||||| || || |||||    
T  41195261 atagtatatacaaaaacagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttatacataagcg---attatcaggataagcgctt 41195357  T
Q  122 gtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||| ||||||||| | |||||||||||||||    
T  41195358 gtgctataagctgcaaataagttatttatccaaacag 41195394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 27976599 - 27976523
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    |||||| ||||||| ||||||||||||||||||  |||| |||| |||||||||| |||||| ||||||||||||||    
T  27976599 ttatagcatatacaaaaacaatttaactttgttcaatcatttgctataaaaatagcttatgtaagcttatacataag 27976523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 14331784 - 14331659
Alignment:
Q  30 atacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctata 129  Q
    ||||| ||||||||||||||| |||||||   | |  || |||||| |||||| |||||||||||||||| ||||   ||||| || |||||||||||||    
T  14331784 atacaaaaacaatttaactttattttatcttgttctgtagaaatagcttatgttagcttatacataagtgcttat---catgagaagcgcttgtgctata 14331688  T
Q  130 aactgcaaatacgctatttatccaaacag 158  Q
    | || |||||| ||| |||||| ||||||    
T  14331687 agcttcaaataagctgtttatctaaacag 14331659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 44931989 - 44932081
Alignment:
Q  8 taaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat 104  Q
    |||||||||||||| |||| ||||||| |||||||||||||   |||||||  |||| ||||| ||||||||||  ||||||||| |||||| ||||    
T  44931989 taaaaacaacttat-atagcatatacaaaaacaatttaact---ttttatcttttgctataaatatagtttatgcaagcttatacctaagtgcttat 44932081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 14576718 - 14576853
Alignment:
Q  20 attataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgc 119  Q
    ||||||| ||||||| ||||||||||||||| |||||||  || | ||  |||||| |||  |||||||||| |||||||    ||||||||| ||  ||    
T  14576718 attatagcatatacaaaaacaatttaactttattttatcctttactatggaaatagcttacatgagcttataaataagtg---cttatcatgataagagc 14576814  T
Q  120 ttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||||| ||| ||||| | | ||||||| |||||    
T  14576815 ttgtgctataagctggaaataagatgtttatcccaacag 14576853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 33541854 - 33541906
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaac 156  Q
    ||||||||| |||| |||||||||||||||||||||| | | |||||||||||    
T  33541854 ttatcatgataaacacttgtgctataaactgcaaataagttgtttatccaaac 33541906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 37769712 - 37769801
Alignment:
Q  4 cttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 96  Q
    |||||||||||||||| |   || ||| ||| ||| ||||||||||| |||||||| |||| ||||||||| ||||||| |  ||||||||||    
T  37769712 cttataaaaacaacttgt---agcataaacaaaaataatttaactttattttatcatttgctataaaaataatttatgtaaatttatacataa 37769801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 24915117 - 24915178
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgt 82  Q
    |||||| ||||||| ||||||||||||||| |||||||   ||| ||| |||||||||||||    
T  24915117 ttatagcatatacaaaaacaatttaactttattttatcttctgctatagaaatagtttatgt 24915178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 16145060 - 16145124
Alignment:
Q  43 ttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattat 107  Q
    ||||| || |||||||| || | ||| ||||| ||||||| |||||||| |||||||||||||||    
T  16145060 ttaacattattttatcattttctatagaaataatttatgtaagcttataaataagtgtttattat 16145124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 26678907 - 26678847
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatg 81  Q
    |||||| || |||||||||||| ||||||| |||||||  ||||  |||||||||||||||    
T  26678907 ttatagcatttacataaacaatgtaactttattttatcttttgctgtaaaaatagtttatg 26678847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 44217295 - 44217335
Alignment:
Q  118 gcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||||||| ||||||||| || ||||||||||||||    
T  44217295 gcttgtgctataagctgcaaatatgcaatttatccaaacag 44217335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 20880480 - 20880347
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgct 120  Q
    |||||| ||||||| |||||||||||||| ||||||||| |||| |||||||||| |||||| ||||||||||||||   |||||   |||| || ||||    
T  20880480 ttatagcatatacaaaaacaatttaactt-gttttatcatttgctataaaaatagcttatgtaagcttatacataagcacttatt---atgataaccgct 20880385  T
Q  121 tgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||||||||||||||||| | | | |||||||||||    
T  20880384 tgtgctataaactgcaaataagttgtctatccaaacag 20880347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 30956700 - 30956825
Alignment:
Q  29 tatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctat 128  Q
    |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| ||||||| ||||| ||    ||||||||| || | ||||||||||    
T  30956700 tatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatg---cttatcatgataagcccttgtgctat 30956796  T
Q  129 aaactgcaaatacgctatttatccaaaca 157  Q
    || ||||||||| ||| ||||||||||||    
T  30956797 aagctgcaaataagctgtttatccaaaca 30956825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 157
Target Start/End: Original strand, 30972512 - 30972637
Alignment:
Q  29 tatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctat 128  Q
    |||||| ||||||||||||||| |||||||  |||| ||| |||||| |||||| ||||||| ||||| ||    ||||||||| || | ||||||||||    
T  30972512 tatacaaaaacaatttaactttattttatcttttgctatagaaatagcttatgtaagcttatgcataaatg---cttatcatgataagcccttgtgctat 30972608  T
Q  129 aaactgcaaatacgctatttatccaaaca 157  Q
    || ||||||||| ||| ||||||||||||    
T  30972609 aagctgcaaataagctgtttatccaaaca 30972637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 28 - 157
Target Start/End: Original strand, 35959529 - 35959655
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgcta 127  Q
    ||||||| ||| ||||||||||| |||||||  || | ||| |||||| |||||||||||||||||||||    | ||||||||| ||  ||||||| ||    
T  35959529 atatacaaaaataatttaactttattttatccttttctatagaaatagcttatgtgagcttatacataag---ctcttatcatgataagagcttgtgata 35959625  T
Q  128 taaactgcaaatacgctatttatccaaaca 157  Q
    ||| ||||||||| ||| ||||||||||||    
T  35959626 taagctgcaaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 12862314 - 12862437
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgct 120  Q
    |||||| ||||||| ||||||||||| | | |||||||  |||| |||||||||| |||||  |||||| |||||||||    ||||||| | || ||||    
T  12862314 ttatagcatataca-aaacaatttaaatctattttatcttttgctataaaaatagattatgcaagcttaaacataagtg---cttatcattataagcgct 12862409  T
Q  121 tgtgctataaactgcaaatacgctattt 148  Q
    | |||||||| ||||||||| |||||||    
T  12862410 tttgctataacctgcaaataggctattt 12862437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 140
Target Start/End: Original strand, 28795944 - 28796014
Alignment:
Q  67 taaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaata 140  Q
    ||||||||||||| || |||||||||||||||||   ||||||||| ||| | ||||||||||| ||| |||||    
T  28795944 taaaaatagtttaggtaagcttatacataagtgt---ttatcatgataaatgtttgtgctataagctgtaaata 28796014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 29002961 - 29003030
Alignment:
Q  86 cttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||||||||||||||||   ||||| |||||||| | |||||| |||||||||   |||||||||||||||    
T  29002961 cttatacataagtgtttat---catgataaacgcttttactataagctgcaaataaattatttatccaaacag 29003030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 46778308 - 46778369
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    ||||||||||||||| ||||||| ||||| ||| |||||| |||| | |||| |||||||||    
T  46778308 aaacaatttaactttattttatctcttgctatagaaatagcttatataagctgatacataag 46778369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 31365401 - 31365472
Alignment:
Q  84 agcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||||||||||||| ||||   ||||| || | |||||||||||| ||||||||| ||| |||||||| ||||    
T  31365401 agcttatacataagtgcttat---catgataatcacttgtgctataagctgcaaataagctgtttatccacacag 31365472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 15757740 - 15757866
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat----tatcatgacaaacgcttgtgctataaa 131  Q
    ||||||||||||||| |||||||| || |  || | |||| |||||||||||||||||||||  |||||    |||||||| || ||||||||||||||     
T  15757740 aaacaatttaactttattttatcattttctttagatatagcttatgtgagcttatacataagcttttatcgcttatcatgataagcgcttgtgctataag 15757839  T
Q  132 ctgcaaatacgctatttatccaaacag 158  Q
    ||| ||||| ||| |||||||||||||    
T  15757840 ctgaaaataagctgtttatccaaacag 15757866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 41407290 - 41407171
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 135  Q
    ||||||||||||||| |||||||  |||  | | |||||| |||||| |||||||||||||||| ||||   ||||| || |||||||||||||| ||||    
T  41407290 aaacaatttaactttattttatcttttggtacagaaatagcttatgtaagcttatacataagtgcttat---catgataagcgcttgtgctataagctgc 41407194  T
Q  136 aaatacgctatttatccaaacag 158  Q
    ||| | ||| |||||||||||||    
T  41407193 aaacaagctgtttatccaaacag 41407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 41812163 - 41812231
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 96  Q
    ||||||| ||||||||||||||  ||||| || ||||||||||||||| |||||| |||||||||||||    
T  41812163 atatacaaaaacaatttaacttcattttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 42659217 - 42659293
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    |||||| ||||||| ||||||||| ||||| ||||| || || |||||||||||| |||||| ||||||||||||||    
T  42659217 ttatagcatatacaaaaacaatttcactttattttaccattttccataaaaatagcttatgtaagcttatacataag 42659293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 33319878 - 33319994
Alignment:
Q  21 ttataggatatacataaacaatttaactttgtt-ttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgc 119  Q
    |||||| ||||||| ||||| |||||||||  | |||||| || | ||||||||||||||||| | ||| |||||||| |   ||||||| || || |||    
T  33319878 ttatagtatatacaaaaacagtttaacttttatgttatcatttactataaaaatagtttatgtaaacttttacataagcg---attatcaggataagcgc 33319974  T
Q  120 ttgtgctataaactgcaaat 139  Q
    ||||||||||| ||||||||    
T  33319975 ttgtgctataagctgcaaat 33319994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 32592604 - 32592515
Alignment:
Q  4 cttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    ||||||||||||||||||   ||  |||||| |||||||||||| || |||||||  || | ||||||||||||||||  ||||||||||||||    
T  32592604 cttataaaaacaacttat---agcgtataca-aaacaatttaacattattttatctttttctataaaaatagtttatgcaagcttatacataag 32592515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 5745560 - 5745610
Alignment:
Q  108 catgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||| ||||||||||| ||||| ||||||||| ||| |||||||||||||    
T  5745560 catgataaacgcttgtgatataagctgcaaataagctctttatccaaacag 5745610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 41241198 - 41241274
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    |||||| ||||||| ||||||||||||||  |||||||  || | ||| |||||| |||||| ||||||| ||||||    
T  41241198 ttatagcatatacaaaaacaatttaacttcattttatcttttcctatagaaatagcttatgtaagcttatccataag 41241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 1058140 - 1058274
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgct 120  Q
    |||||| ||||||| |||||  |||||||| |||||| | |||| |||||||||| |||||| |||||||||||||| |    |||||||   || ||||    
T  1058140 ttatagcatatacaaaaacagattaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcg---cttatcatagtaagcgct 1058236  T
Q  121 tgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||||||| ||||||||| ||| ||||| |||||||    
T  1058237 tgtgctataagctgcaaataagctgtttattcaaacag 1058274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 10758322 - 10758397
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 96  Q
    |||||| ||||||| ||||||||||||||| |||||| | |||| ||| |||||||||| ||||||||||||||||    
T  10758322 ttatagcatatacaaaaacaatttaactttattttatgatttgctatagaaatagtttacgtgagcttatacataa 10758397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 9130423 - 9130506
Alignment:
Q  68 aaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaa 154  Q
    |||||||| ||||| ||||||||||||||||| |||| || ||||| |   |||||||||||| ||||||||| |||||||||||||    
T  9130423 aaaaatagcttatgcgagcttatacataagtgattatcatgatgacca---cttgtgctataagctgcaaataagctatttatccaa 9130506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 14956406 - 14956494
Alignment:
Q  66 ataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    |||||||||| |||||  |||||||||||||||| ||||   ||||| || || ||||||||||| ||||||||| | | ||||||||||||    
T  14956406 ataaaaatagcttatgcaagcttatacataagtgcttat---catgataagcgattgtgctataagctgcaaataagttgtttatccaaaca 14956494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 12497297 - 12497372
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 96  Q
    |||||| ||||||| |||||| |||||||| |||||||  |||| |||||||| | |||||  |||||||||||||    
T  12497297 ttatagcatatacaaaaacaagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 40981054 - 40981000
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||| || || |||||||||||||| ||||||||| ||| |||||||||||||    
T  40981054 ttatcaagataagcgcttgtgctataagctgcaaataagctgtttatccaaacag 40981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 11861771 - 11861730
Alignment:
Q  61 ttgccataaaaatagtttatgtgagcttatacataagtgttt 102  Q
    |||| ||| |||||| ||||||||||||||||||||||||||    
T  11861771 ttgctatagaaatagcttatgtgagcttatacataagtgttt 11861730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 12976198 - 12976141
Alignment:
Q  40 aatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    ||||||||||| ||||||   |||| ||| |||||| |||||||||||||||||||||    
T  12976198 aatttaactttattttatattttgctatagaaatagcttatgtgagcttatacataag 12976141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 32372628 - 32372495
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgct 120  Q
    |||||| ||||||| |||||||| |||||| ||||||||  ||| |||| |||||||||||| ||  |||||||||| |    ||||||||| ||  |||    
T  32372628 ttatagcatatacaaaaacaattcaactttattttatcaggtgctataataatagtttatgtaagtgtatacataaggg---cttatcatgataagtgct 32372532  T
Q  121 tgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    |||||||||| ||||||||| | | ||||||||||||    
T  32372531 tgtgctataagctgcaaataagttgtttatccaaaca 32372495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 35446051 - 35445992
Alignment:
Q  29 tatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagctt 88  Q
    |||||| ||||||||||||||| |||||||| |||| |||||||||| |||||| |||||    
T  35446051 tatacaaaaacaatttaactttattttatcatttgctataaaaatagcttatgtaagctt 35445992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 3932758 - 3932860
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgag-cttatacataagtgtttattatcatgacaaacgcttgtgct 126  Q
    ||||||| |||||||| |||||  |||||||  |||| |||||||||| |||||| |  |||||||||||||| | |||||||||| ||  | |||||||    
T  3932758 atatacaaaaacaattaaacttcattttatcttttgctataaaaatagcttatgtaattcttatacataagtggtgattatcatgataagtgtttgtgct 3932857  T
Q  127 ata 129  Q
    |||    
T  3932858 ata 3932860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 7319092 - 7319209
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 135  Q
    ||||||||| ||||| ||||||   ||||  || |||||| |||||| ||||||| |||||||| ||||   ||||| || |||||||||||||| |||     
T  7319092 aaacaatttcactttattttatattttgcgttagaaatagcttatgtaagcttatgcataagtgcttat---catgataagcgcttgtgctataagctgt 7319188  T
Q  136 aaatacgctatttatccaaac 156  Q
    ||||| ||| ||||| |||||    
T  7319189 aaataagctgtttattcaaac 7319209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 9202884 - 9202938
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||| |||| |||||||||||| ||||||||| | | |||||||||||||    
T  9202884 ttatcatgataaacacttgtgctataagctgcaaataagatgtttatccaaacag 9202938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 24030548 - 24030601
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    ||||||||| ||  ||||||||||||| ||||||||| ||| ||||||||||||    
T  24030548 ttatcatgataagtgcttgtgctataagctgcaaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 32022008 - 32021968
Alignment:
Q  117 cgcttgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  32022008 cgcttgtgctataatctgcaaataatctatttatccaaaca 32021968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 24626299 - 24626223
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    |||||| ||||||| |||||||||||||||||||||||  || | ||| |||||| |||||| ||||||||||||||    
T  24626299 ttatagaatatacaaaaacaatttaactttgttttatcctttcctatagaaatagcttatgtaagcttatacataag 24626223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 9604784 - 9604741
Alignment:
Q  114 aaacgcttgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  9604784 aaacgcttgtgctataaactgcaaataagctgtttatccaaaca 9604741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 18076185 - 18076084
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 135  Q
    |||||||||||| || |||| ||  |||| |||||||||  |||||  |||||||||||||||| |||||   |||| || |||||||||||||| ||||    
T  18076185 aaacaatttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtgcttatt---atgataagcgcttgtgctataagctgc 18076089  T
Q  136 aaata 140  Q
    |||||    
T  18076088 aaata 18076084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 6538427 - 6538387
Alignment:
Q  118 gcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||||||| ||||||||| |||||||||||||||||    
T  6538427 gcttgtgctataagctgcaaataagctatttatccaaacag 6538387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 35069486 - 35069432
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||| ||||||||||||||||| ||||||||| | | |||||| ||||||    
T  35069486 ttatcatgataaacgcttgtgctataagctgcaaataagttgtttatcaaaacag 35069432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 30536475 - 30536406
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    ||||||| |||||||||||| || |||||||| |||| |||| ||||| |||||  | ||||||||||||    
T  30536475 atatacaaaaacaatttaacattattttatcatttgctataataatagcttatgcaaacttatacataag 30536406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 46078144 - 46078075
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    ||||||| |||||||||||||||||||||||  || | |||||||||  |||||| ||||||||||||||    
T  46078144 atatacaaaaacaatttaactttgttttatctttttctataaaaataacttatgtaagcttatacataag 46078075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 158
Target Start/End: Complemental strand, 5947137 - 5947031
Alignment:
Q  45 aactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgct 144  Q
    ||||||||||||| | |||| || |||||||||||| | ||||||||||||||||     |||||||| ||    ||||||||||| || |||||| |||    
T  5947137 aactttgttttataatttgctattaaaatagtttatctaagcttatacataagtg---cctatcatgataa----ttgtgctataagcttcaaataagct 5947045  T
Q  145 atttatccaaacag 158  Q
    ||||||||||||||    
T  5947044 atttatccaaacag 5947031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 33266550 - 33266628
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtg 99  Q
    ||||||||| || | || |||||||||||| |||||||  |||| ||| |||||| || ||||||||||||||||||||    
T  33266550 ttataggatgtagaaaagcaatttaactttattttatcctttgctatataaatagcttttgtgagcttatacataagtg 33266628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 38500064 - 38500118
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||| || |||||||||||||||||||||||| ||| |||||| ||||||    
T  38500064 ttatcatgataagcgcttgtgctataaactgcaaataagctgtttatctaaacag 38500118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 21568734 - 21568829
Alignment:
Q  61 ttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacaga 159  Q
    |||| |||||||||| |||||  ||||||||||||||||    ||||||||| || | ||| |||||||| ||||||| | ||| ||||||||||||||    
T  21568734 ttgctataaaaatagcttatgcaagcttatacataagtg---cttatcatgataagcacttatgctataagctgcaaacaagctgtttatccaaacaga 21568829  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 45004676 - 45004636
Alignment:
Q  118 gcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  45004676 gcttgtgctataaactgcaaataagttatttatccaaacag 45004636  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 9210587 - 9210498
Alignment:
Q  66 ataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacag 158  Q
    |||||| ||| |||||  |||||||||||||| |   |||||||||| ||| | ||| ||||||| ||||||||| ||| |||||||||||||    
T  9210587 ataaaagtagcttatgcaagcttatacataagcg---attatcatgataaatgtttgcgctataagctgcaaataagctgtttatccaaacag 9210498  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 40252180 - 40252234
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgt 82  Q
    ||||||| |||| ||||||||||||||||||| |||| |||||| ||| ||||||    
T  40252180 atatacaaaaacgatttaactttgttttatcatttgcaataaaactagcttatgt 40252234  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 54069468 - 54069561
Alignment:
Q  3 acttataaaaacaacttattataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtg 99  Q
    ||||||||||||||   ||||||| ||||||| |||||||||||| || |||||||  |||  ||||||||||  ||||  ||||||||||||||||    
T  54069468 acttataaaaacaa---attatagcatatacaaaaacaatttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtg 54069561  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 157
Target Start/End: Complemental strand, 43505945 - 43505829
Alignment:
Q  36 aaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgctataaactgc 135  Q
    |||||||||||| || |||||||  |||| |||||||||| |||||  |||||||||||||||| |||| || |||     || |||||||||||  |||    
T  43505945 aaacaatttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttatcatgatg-----cgtttgtgctataagttgc 43505851  T
Q  136 aaatacgctatttatccaaaca 157  Q
    ||||| | | ||||||||||||    
T  43505850 aaataagttgtttatccaaaca 43505829  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 22030207 - 22030132
Alignment:
Q  21 ttataggatatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataag 97  Q
    |||||| ||||||| ||| ||| ||||||| ||||||| ||| | ||| |||||| |||||||||||||||||||||    
T  22030207 ttatagcatatacaaaaataatataactttattttatc-ctttctatagaaatagcttatgtgagcttatacataag 22030132  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 31851439 - 31851383
Alignment:
Q  40 aatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataa 96  Q
    ||||||||||| |||||||| |||  |||||||||| |||||||||||| |||||||    
T  31851439 aatttaactttattttatcatttgttataaaaatagcttatgtgagcttctacataa 31851383  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 41336757 - 41336682
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttat 104  Q
    ||||||| ||||||||||||||| |||||||  |||| |||||||||| |||||  ||| |||||||||||| ||||    
T  41336757 atatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttatgcaagcctatacataagtgcttat 41336682  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 44863098 - 44863151
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaaca 157  Q
    ||||||||||||  ||||||||||||| ||||||||| | | ||||||||||||    
T  44863098 ttatcatgacaagtgcttgtgctataagctgcaaataagttgtttatccaaaca 44863151  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 27029 - 27085
Alignment:
Q  104 ttatcatgacaaacgcttgtgctataaactgcaaatacgctatttatccaaacagac 160  Q
    ||||||||| || |||||||||||||| ||||||| | | | |||||||||||||||    
T  27029 ttatcatgataagcgcttgtgctataagctgcaaacaagatgtttatccaaacagac 27085  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 162
Target Start/End: Complemental strand, 19494911 - 19494780
Alignment:
Q  28 atatacataaacaatttaactttgttttatcacttgccataaaaatagtttatgtgagcttatacataagtgtttattatcatgacaaacgcttgtgcta 127  Q
    ||||||| |||||||||| |||| |||||||| |||| ||| || ||| |||||| | |||||||||| ||| ||||   ||||| ||   |||||||||    
T  19494911 atatacaaaaacaatttagctttattttatcatttgctatagaactagcttatgtaaccttatacataggtgcttat---catgaaaagtacttgtgcta 19494815  T
Q  128 taaactgcaaatacgctatttatccaaacagactc 162  Q
    ||| || | |||| | | |||||| ||||||||||    
T  19494814 taagctccgaataagatgtttatctaaacagactc 19494780  T

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