View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2725_high_9 (Length: 440)
Name: NF2725_high_9
Description: NF2725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2725_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Complemental strand, 5984901 - 5984501
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
5984901 |
acgaacagcatcattgagcgcagaaccgaagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaac |
5984802 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5984801 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggaagtacacacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
5984702 |
T |
|
| Q |
218 |
tatgaactgcaaataattaaagagcacacaaatacaaccccatcaagcaaccaagcaaaaactacaaaatgtattattattattattcatcatgttgtta |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5984701 |
tatgaactgcaaa----taaagagcacacaaatacaaccccatcaagcaaccaagcaaaaactacaaaatg---tattattattattcatcatgttgtta |
5984609 |
T |
|
| Q |
318 |
acatttctgactaatggtgtatgaccaaaaattaaccaaaatattctggatttcaannnnnnnagttcatcgaaaattgactatggtttcttttcaaata |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5984608 |
acatttctgactaatggtgtatgaccaaaaattaaccaaaatattctggatttcaa--tttttagttcatcgaaaattgactatggtttcttttcaaata |
5984511 |
T |
|
| Q |
418 |
agatggacat |
427 |
Q |
| |
|
|||||||||| |
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|
| T |
5984510 |
agatggacat |
5984501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 5968892 - 5968684
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
5968892 |
acgaacagcatcattgagcgcaaaaccgaagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaac |
5968793 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
5968792 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggaagtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgc |
5968693 |
T |
|
| Q |
218 |
tatgaactg |
226 |
Q |
| |
|
| ||||||| |
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|
| T |
5968692 |
tttgaactg |
5968684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 8715255 - 8715463
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
8715255 |
acgaacagcatcattgagcgcacaaccgaagggaattccaagatcagtatcaaaattggcaagaacatcatcaagaactccttcaccaaatagaaggaac |
8715354 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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|
| T |
8715355 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggatgtacgcacaaccccacgtatccgtgaggaatcctccagttcattctctatgc |
8715454 |
T |
|
| Q |
218 |
tatgaactg |
226 |
Q |
| |
|
| ||||||| |
|
|
| T |
8715455 |
tttgaactg |
8715463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 5963759 - 5963544
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
5963759 |
acgaacagcatcattaagagcagaaccaaaaggaattccaaaatcagtatcaaaattggcaagcacatcatcaagagttccttcaccaaatagaaggaac |
5963660 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
||||||||||||||||||| || || |||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |
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|
| T |
5963659 |
ccaaagaagcttgtcagtacatatactgaagagcatagagtaagggaagtacgcacaaccccacgcatccgtgaggaatcctccagttcattatcaatgt |
5963560 |
T |
|
| Q |
218 |
tatgaactgcaaataa |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
5963559 |
tatgaactgcaaataa |
5963544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 5935362 - 5935147
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||| || ||||||||||||||| |||||| |||| | ||||||||||||||||| |
|
|
| T |
5935362 |
acgaacagcatcattgagcgcagaaccaaaaggaattccgagattagtatcaaaattggcaagaacgtcaggaagagtatcgtcaccaaatagaaggaac |
5935263 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||| || ||||| |||||| ||||||||||||||||||||| |
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|
| T |
5935262 |
ccaaagaagcttgtcagtaagtaaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcctccagttcattatctatgt |
5935163 |
T |
|
| Q |
218 |
tatgaactgcaaataa |
233 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
5935162 |
tgtgaactgcaaataa |
5935147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 5628121 - 5628331
Alignment:
| Q |
18 |
acgaacagcatcattgagtgcagaaccaaagggaattccaagatcagcatcaaaattggcaagcacgtcatcaagaactccttcaccaaatagaaggaat |
117 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5628121 |
acgaacagcatcgttgagcaaagaaccaaaaggaattccaagatcagcatcgaaattggcaagtacgtcatcaagagttccttcaccaaataggaggaac |
5628220 |
T |
|
| Q |
118 |
ccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccgctcatccgtgaggaatcctccagttcattatctatgc |
217 |
Q |
| |
|
|||||||||||| ||| ||| ||||| || ||||||||| |||| ||||| ||||| || |||| ||||| ||||| |||||||||||||||| |
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|
| T |
5628221 |
ccaaagaagcttatcattaaatacacggatgagcatagaccgagggctgtacgtacaacgccttgcatctgtgagttgtcctcgagttcattatctatgc |
5628320 |
T |
|
| Q |
218 |
tatgaactgca |
228 |
Q |
| |
|
| ||||||||| |
|
|
| T |
5628321 |
tgtgaactgca |
5628331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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